Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

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SRX635214: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Enteritidis str. NY-swgs1328 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 859,304 spots, 403.3M bases, 231.8Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center

PRJNA227458 • SRP033012 • All experiments • All runs

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Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis

Sample:

SAMN02867863 • SRS649228 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Enteritidis

Library:

Name: Salmonella enterica str. NY-swgs1328 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Enteritidis str. NY-swgs1328.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.42

Runs: 1 run, 859,304 spots, 403.3M bases, 231.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR1482378	859,304	403.3M	231.8Mb	2014-06-27

ID:: 890086

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