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SRX652275: Whole genome shotgun sequencing of Salmonella Enterica str. NY-swgs1342 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 597,341 spots, 290.6M bases, 156.5Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.
Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)
Study: GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center
PRJNA227458 • SRP033012 • All experiments • All runs
show Abstracthide Abstract
Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis
Sample:
SAMN02902864 • SRS659950 • All experiments • All runs
Organism: Salmonella enterica subsp. enterica serovar Enteritidis
Library:
Name: Salmonella Enterica str. NY-swgs1342 shotgun
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Construction protocol: Illumina Nextera XT library created for Salmonella Enterica str. NY-swgs1342.
Spot descriptor:
1  forward251  reverse

Pipeline: show...hide...
NameStepPrev StepProgramVersion
base caller0NULLRTA1.18.42
Runs: 1 run, 597,341 spots, 290.6M bases, 156.5Mb
Run# of Spots# of BasesSizePublished
SRR1514708597,341290.6M156.5Mb2014-07-14

ID:
911972

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