Whole genome shotgun sequencing of Salmonella Enterica subsp. Enteric... - SRA

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SRX700227: Whole genome shotgun sequencing of Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1451 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.4M spots, 674.1M bases, 345.6Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center

PRJNA227458 • SRP033012 • All experiments • All runs

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Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis

Sample:

SAMN03019757 • SRS700412 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Enteritidis

Library:

Name: Salmonella Enterica str. NY-swgs1451 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1451.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.4M spots, 674.1M bases, 345.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR1574249	1,415,713	674.1M	345.6Mb	2014-09-12

ID:: 986024

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