Whole genome shotgun sequencing of Salmonella Enterica subsp. Enteric... - SRA

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SRX745789: Whole genome shotgun sequencing of Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1510 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 737,289 spots, 338M bases, 213.1Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center

PRJNA227458 • SRP033012 • All experiments • All runs

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Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis

Sample:

SAMN03103581 • SRS732476 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Berta

Library:

Name: Salmonella Enterica str. NY-swgs1510 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1510.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 737,289 spots, 338M bases, 213.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR1633859	737,289	338M	213.1Mb	2014-10-28

ID:: 1077097

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