Whole genome shotgun sequencing of Salmonella Enterica subsp. Enteric... - SRA

Links from BioSample

SRX748914: Whole genome shotgun sequencing of Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1520 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 1.1M spots, 513.9M bases, 297.2Mb downloads

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FOOD AND DRUG ADMINISTRATION, CENTER FOR FOOD SAFETY AND APPLIED NUTRITION (CFSAN)

Study: GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center

PRJNA227458 • SRP033012 • All experiments • All runs

show Abstracthide Abstract

Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis

Sample:

SAMN03140283 • SRS734904 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Enteritidis

Library:

Name: Salmonella Enterica str. NY-swgs1520 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella Enterica subsp. Enterica serovar Enteritidis str. NY-swgs1520.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.18.54

Runs: 1 run, 1.1M spots, 513.9M bases, 297.2Mb

Run	# of Spots	# of Bases	Size	Published
SRR1636556	1,092,443	513.9M	297.2Mb	2014-10-31

ID:: 1082864

SRA

Sequence Read Archive

Result Filters

Send to:

Links from BioSample

Supplemental Content

Related information

Recent activity