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SRX26611964: amplicon sequencing of TP0865 recombinant motifs - clinical samples and controls
1 ILLUMINA (Illumina MiSeq) run: 220,760 spots, 132.9M bases, 59.6Mb downloads

Design: primers were designed to amplify ~400 bp fragments spanning from TP0865 "hatch" motif through ECL2 (Amplicon A) and ECL2 through ECL4 (Amplicon B). Amplification was performed for 30 cycles, then barcoded and sequenced on 2x300 on the illumina miseq
Submitted by: University of Washington Laboratory Medicine
Study: T. pallidum sequencing from gastric and colon biopsies from an HIV-infected patient
PRJNA1155200 • SRP529931 • All experiments • All runs
show Abstracthide Abstract
T. pallidum was hybrid captured from DNA extracted from FFPE colon and gastric tissue taken during diagnostic biopsy.
Sample:
SAMN44592224 • SRS23110646 • All experiments • All runs
Organism: Treponema pallidum
Library:
Name: colon_ampliconA_rep2
Instrument: Illumina MiSeq
Strategy: AMPLICON
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 220,760 spots, 132.9M bases, 59.6Mb
Run# of Spots# of BasesSizePublished
SRR31231823220,760132.9M59.6Mb2024-12-05

ID:
35954419

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