amplicon sequencing of TP0865 recombinant motifs - clinical samples a... - SRA

SRX26611964: amplicon sequencing of TP0865 recombinant motifs - clinical samples and controls
1 ILLUMINA (Illumina MiSeq) run: 220,760 spots, 132.9M bases, 59.6Mb downloads

Design: primers were designed to amplify ~400 bp fragments spanning from TP0865 "hatch" motif through ECL2 (Amplicon A) and ECL2 through ECL4 (Amplicon B). Amplification was performed for 30 cycles, then barcoded and sequenced on 2x300 on the illumina miseq

Submitted by: University of Washington Laboratory Medicine

Study: T. pallidum sequencing from gastric and colon biopsies from an HIV-infected patient

PRJNA1155200 • SRP529931 • All experiments • All runs

show Abstracthide Abstract

T. pallidum was hybrid captured from DNA extracted from FFPE colon and gastric tissue taken during diagnostic biopsy.

Sample:

SAMN44592224 • SRS23110646 • All experiments • All runs

Organism: Treponema pallidum

Library:

Name: colon_ampliconA_rep2

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: GENOMIC

Selection: PCR

Layout: PAIRED

Runs: 1 run, 220,760 spots, 132.9M bases, 59.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR31231823	220,760	132.9M	59.6Mb	2024-12-05

ID:: 35954419

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity