Whole genome shotgun sequencing of Escherichia coli serovar O138 by I... - SRA

SRX1991207: Whole genome shotgun sequencing of Escherichia coli serovar O138 by Illumina NextSeq 500
1 ILLUMINA (NextSeq 500) run: 4.3M spots, 627.4M bases, 237.5Mb downloads

External Id: EXT00204883

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA230969 • SRP058582 • All experiments • All runs

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Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.

Sample: Pathogen: environmental/food/other sample from Escherichia sp.

SAMN05440292 • SRS1594007 • All experiments • All runs

Organism: Escherichia sp. MOD1-EC5449

Library:

Name: Escherichia coli serovar O138 Nextera XT shotgun

Instrument: NextSeq 500

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Escherichia coli serovar O138.

Spot descriptor:

1 forward151 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	Bcl2fastq	2.1

Runs: 1 run, 4.3M spots, 627.4M bases, 237.5Mb

Run	# of Spots	# of Bases	Size	Published
SRR3989604	4,299,988	627.4M	237.5Mb	2016-07-30

ID:: 2864848

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