Whole genome shotgun sequencing of Escherichia coli serovar O43:H40 b... - SRA

SRX1989306: Whole genome shotgun sequencing of Escherichia coli serovar O43:H40 by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 299,730 spots, 143.7M bases, 90.7Mb downloads

External Id: EXT00204152

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: US Food and Drug Administration

PRJNA230969 • SRP058582 • All experiments • All runs

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Whole genome sequencing of cultured E. coli as part of the US Food and Drug Administration surveillance project for the rapid detection of foodborne contamination events.

Sample:

SAMN05452866 • SRS1593049 • All experiments • All runs

Organism: Escherichia coli

Library:

Name: Escherichia coli serovar O43:H40 Nextera XT v2 shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT v2 library created for Escherichia coli serovar O43:H40.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 299,730 spots, 143.7M bases, 90.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR3987961	299,730	143.7M	90.7Mb	2016-07-29

ID:: 2861734

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