Mapped reads for uncultivated Accumulibacter sp. UBA8770 genome recov... - SRA

SRX3575703: Mapped reads for uncultivated Accumulibacter sp. UBA8770 genome recovered from SRX645896
1 ILLUMINA (Illumina HiSeq 2000) run: 22.2M spots, 6.5G bases, 3Gb downloads

Design: Reads from SRX645896 were mapped with BWA-MEM v0.7.12-r1039 to a metagenome assembly produced with CLC v4.4.1. The resulting mapping file was then pruned to the contigs comprising the UBA8770 genome.

Submitted by: University of Queensland

Study: Collection of 3,087 bacterial metagenome-assembled genomes recovered from metagenomes available from the Sequence Read Archive.

PRJNA417962 • SRP130174 • All experiments • All runs

show Abstracthide Abstract

Collection of 3,087 bacterial metagenome-assembled genomes (MAGs) recovered from metagenomes available from the Sequence Read Archive. These MAGs comprise part of the data set used to define a standardised bacterial taxonomy based on a concatenated protein phylogeny that conservatively removes polyphyletic groups and normalises ranks based on relative evolutionary divergence.

Sample: Uncultivated Accumulibacter sp. UBA8770 genome recovered from SRX645896

SAMN08018382 • SRS2845585 • All experiments • All runs

Organism: Accumulibacter sp.

Library:

Name: UBA8770_library

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: METAGENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 22.2M spots, 6.5G bases, 3Gb

Run	# of Spots	# of Bases	Size	Published
SRR6485684	22,229,368	6.5G	3Gb	2018-02-23

ID:: 4961205

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Sequence Read Archive

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