U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX8664943: GSM4653910: Ferrous iron treatment_rep1; Streptococcus suis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 5.9M spots, 1.8G bases, 531.6Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic analysis of Streptococcus suis in response to ferrous iron and cobalt toxicity
show Abstracthide Abstract
We explored the transcriptome change of Streptococcus suis in the presence of ferrous iron and cobalt by RNA sequencing. The data revealed that expression of a lot of genes was altered to respond to ferrous iron and cobalt toxicity. Moreover, most of the genes differentially expressed in response to cobalt are the same as those in response to ferrous iron. Overall design: The transcription profiles of Streptococcus suis following treatment with ferrous iron and cobalt were compared with that treatment with water. Each condition contains three biological replications.
Sample: Ferrous iron treatment_rep1
SAMN15438799 • SRS6945864 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using an Eastep Super Total RNA Isolation Kit (Promega, Shanghai, China), according to the manufacturer's instructions. RNA integrity and concentration were evaluated by gel electrophoresis and spectrophotometric analysis, respectively. A total amount of 3 µg RNA per sample was used as input material for the RNA sample preparations. Sequencing libraries were generated using NEBNext® Ultra™ Directional RNA Library Prep Kit for Illumina® (NEB, USA) following manufacturer's recommendations and index codes were added to attribute sequences to each sample.
Experiment attributes:
GEO Accession: GSM4653910
Links:
Runs: 1 run, 5.9M spots, 1.8G bases, 531.6Mb
Run# of Spots# of BasesSizePublished
SRR121438895,880,1331.8G531.6Mb2020-07-05

ID:
11272961

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...