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SRX9661297: GSM4968641: Immune Checkpoint Blockade (ICB) treated mouse - replicate 1; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 40.1M spots, 6.1G bases, 1.9Gb downloads

Submitted by: NCBI (GEO)
Study: Cell-autonomous Inflammation of BRCA1-deficient Ovarian Cancers Drives Intrinsic Immunoreactivity and Immune Resistance through STING and VEGF
show Abstracthide Abstract
BRCA1 loss leads to tumor cell transcriptional reprogramming, resulting in a DNA damage-driven, mandatory cell-autonomous type I IFN inflammatory activation mediated by STING and TREX1/2. PARP inhibition augmented this immunoreactivity, creating contextual lethality to dual immune checkpoint blockade (ICB) in vivo. BRCA1-deficient tumor can escape T-cell inflammation through targeted deletion or methylation of the DNA sensing/IFN pathway genes, such as STING, IFNB1 or the chemokine CCL5. Alternatively, BRCA-mutated carcinomas retaining immunoreactivity upregulate their VEGF-A expression driven by STING, which mediates immune resistance and tumor progression. STING elimination attenuated tumor growth and abrogated therapeutic resistance to dual ICB. VEGF-A blockade synergized with immune checkpoint blockade and/or PARP inhibition to control outgrowth of Brca1-/- ovarian tumors, offering opportunities for rational combination therapy of cancers with homologous recombination repair deficiency (HRD). Overall design: RNAseq analysis of ID8 Trp53-/-Brca1-/- tumors treated with Olaparib and/or/or dual PD-L1/CTLA-4 blockade and/or anti-VEGFA
Sample: Immune Checkpoint Blockade (ICB) treated mouse - replicate 1
SAMN17039440 • SRS7860272 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was isolated from 100 to 500 mg of frozen tissue with TRIzol reagent followed by RNA purification using the RNA Easy Mini Kit. Truseq Stranded RNA. Whole transcriptome sequencing method with depletion of cytoplasmic RNA.
Experiment attributes:
GEO Accession: GSM4968641
Links:
Runs: 1 run, 40.1M spots, 6.1G bases, 1.9Gb
Run# of Spots# of BasesSizePublished
SRR1322893940,118,8446.1G1.9Gb2021-06-17

ID:
12627908

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