WGS of L. paragasseri UMB3776 - SRA

SRX21802224: WGS of L. paragasseri UMB3776
1 ILLUMINA (Illumina NovaSeq 6000) run: 2.7M spots, 741.8M bases, 211.1Mb downloads

Design: Illumina sequencing libraries were prepared using the tagmentation-based and PCR-based Illumina DNA Prep kit and custom IDT 10bp unique dual indices (UDI) with a target insert size of 320 bp.

Submitted by: Loyola University Chicago

Study: Female Urinary Microbiota Genome Sequencing

PRJNA316969 • SRP072679 • All experiments • All runs

show Abstracthide Abstract

Recently, bacterial communities (microbiota) have been discovered in the female bladder. Thus, the “sterile urine” paradigm is no longer valid. In an effort to provide a comprehensive view of the newly discovered female urinary microbiota (FUM), we have established an Enhanced Quantitative Urine Culture (EQUC) protocol. EQUC isolates bacteria from 75-90% of urine samples deemed 'no growth' by the standard clinical microbiology urine culture method. We have begun to sequence and annotate the genomes of these isolated bacteria.

Sample:

SAMN37434655 • SRS18903231 • All experiments • All runs

Organism: Lactobacillus paragasseri

Library:

Name: pg3776

Instrument: Illumina NovaSeq 6000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 2.7M spots, 741.8M bases, 211.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR26087523	2,739,346	741.8M	211.1Mb	2023-09-18

ID:: 29605589

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