Whole-genome sequencing of C. difficile from a hospital setting - SRA

SRX24462904: Whole-genome sequencing of C. difficile from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 681.9M bases, 339.4Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

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The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN41230130 • SRS21215832 • All experiments • All runs

Organism: Clostridioides difficile

Library:

Name: BWH-CDIFF-0000-0097-3655

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.2M spots, 681.9M bases, 339.4Mb

Run	# of Spots	# of Bases	Size	Published
SRR28906478	1,215,598	681.9M	339.4Mb	2024-05-06

ID:: 32778997

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