Whole-genome sequencing of pathogens from a hospital setting - SRA

SRX27031708: Whole-genome sequencing of pathogens from a hospital setting
1 ILLUMINA (Illumina MiSeq) run: 1.2M spots, 632.5M bases, 311.9Mb downloads

Design: Illumina library prep using Nextera DNA UD indices

Submitted by: Brigham and Women's Hospital

Study: Antimicrobial Surveillance from Brigham & Women's Hospital, Boston MA

PRJNA278886 • SRP056445 • All experiments • All runs

show Abstracthide Abstract

The goal of this project is to identify carbapenemases and other beta-lactamases in clinical isolates with WGS and assess their mobilization potential . The results can support national surveillance of clinically identified pathogens and provide invaluable information to infection control in hospital.

Sample:

SAMN45502516 • SRS23495442 • All experiments • All runs

Organism: Clostridioides difficile

Library:

Name: BWH-CDIFF-0000-0098-0696

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Runs: 1 run, 1.2M spots, 632.5M bases, 311.9Mb

Run	# of Spots	# of Bases	Size	Published
SRR31669023	1,214,185	632.5M	311.9Mb	2024-12-10

ID:: 36503226

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity