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    Nup210l nucleoporin 210-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365844, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nup210lprovided by RGD
    Official Full Name
    nucleoporin 210-likeprovided by RGD
    Primary source
    RGD:1310250
    See related
    EnsemblRapid:ENSRNOG00000055790 AllianceGenome:RGD:1310250
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310250
    Summary
    Predicted to act upstream of or within Sertoli cell development and spermatid development. Predicted to be located in membrane. Predicted to be part of nuclear pore. Orthologous to human NUP210L (nucleoporin 210 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 57.2), Spleen (RPKM 26.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nup210l in Genome Data Viewer
    Location:
    2q34
    Exon count:
    42
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (177843647..177962975)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (175545999..175665332)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (189453932..189571918)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 141 Neighboring gene microRNA 190b Neighboring gene tropomyosin 3 Neighboring gene transfer RNA proline (anticodon AGG) 20 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene RNA, U6 small nuclear 278 Neighboring gene ribosomal protein S27 Neighboring gene RAB13, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Mutational insertion of a ROSA26-EGFP transgene leads to defects in spermiogenesis and male infertility in mice. Walters EM, et al. Comp Med, 2009 Dec. PMID 20034429, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    acts_upstream_of_or_within Sertoli cell development ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within spermatid development ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nuclear pore membrane glycoprotein 210-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191900.2 → NP_001178829.1  nuclear pore membrane glycoprotein 210-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      Related
      ENSRNOP00000101046.1, ENSRNOT00000126437.1
      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      177843647..177962975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282260.1 → XP_063138330.1  nuclear pore membrane glycoprotein 210-like isoform X3

    2. XM_063282264.1 → XP_063138334.1  nuclear pore membrane glycoprotein 210-like isoform X8

    3. XM_063282261.1 → XP_063138331.1  nuclear pore membrane glycoprotein 210-like isoform X4

    4. XM_063282265.1 → XP_063138335.1  nuclear pore membrane glycoprotein 210-like isoform X9

    5. XM_063282268.1 → XP_063138338.1  nuclear pore membrane glycoprotein 210-like isoform X12

    6. XM_063282267.1 → XP_063138337.1  nuclear pore membrane glycoprotein 210-like isoform X11

    7. XM_039102771.2 → XP_038958699.1  nuclear pore membrane glycoprotein 210-like isoform X14

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    8. XM_039102774.2 → XP_038958702.1  nuclear pore membrane glycoprotein 210-like isoform X16

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    9. XM_039102772.2 → XP_038958700.1  nuclear pore membrane glycoprotein 210-like isoform X15

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    10. XM_039102773.2 → XP_038958701.1  nuclear pore membrane glycoprotein 210-like isoform X16

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    11. XM_039102775.2 → XP_038958703.1  nuclear pore membrane glycoprotein 210-like isoform X17

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    12. XM_063282270.1 → XP_063138340.1  nuclear pore membrane glycoprotein 210-like isoform X18

    13. XM_063282258.1 → XP_063138328.1  nuclear pore membrane glycoprotein 210-like isoform X1

    14. XM_063282259.1 → XP_063138329.1  nuclear pore membrane glycoprotein 210-like isoform X2

      UniProtKB/TrEMBL
      D3Z8Z6
      Related
      ENSRNOP00000071641.2, ENSRNOT00000087063.3

    15. XM_063282262.1 → XP_063138332.1  nuclear pore membrane glycoprotein 210-like isoform X5

    16. XM_063282266.1 → XP_063138336.1  nuclear pore membrane glycoprotein 210-like isoform X10

    17. XM_039102765.2 → XP_038958693.1  nuclear pore membrane glycoprotein 210-like isoform X6

      Conserved Domains (2) summary
      pfam02368
      Location:1079 → 1153
      Big_2; Bacterial Ig-like domain (group 2)
      cl02708
      Location:460 → 523
      Big_2; Bacterial Ig-like domain (group 2)

    18. XM_063282263.1 → XP_063138333.1  nuclear pore membrane glycoprotein 210-like isoform X7

    19. XM_063282269.1 → XP_063138339.1  nuclear pore membrane glycoprotein 210-like isoform X13

    RNA

    1. XR_010063631.1 RNA Sequence

    2. XR_010063632.1 RNA Sequence

    3. XR_005500328.2 RNA Sequence

    4. XR_005500329.2 RNA Sequence

    5. XR_005500330.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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