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Accession: PRJNA248064 ID: 248064

Public Health England Pathogen Sequencing

Whole genome sequencing data from Public Health England.
AccessionPRJNA248064
TypeUmbrella project
KeywordGMI
Publications
  • Ashton P et al.,"Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa", Genome Medicine, 2017;9(92)
SubmissionRegistration date: 19-May-2014
Public Health England
NCBI Links
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)116636
WGS master115668
Genomic DNA238
SRA Experiments151238
Protein Sequences379245
Publications
PubMed3
PMC3
Other datasets
BioSample151528
Assembly115791
SRA Data Details
ParameterValue
Data volume, Gbases65,005
Data volume, Tbytes27.87
This project encompasses the following 10 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
Contigs
No data links
Total

3
5
2
10
BioProject
accession
Assembly
level
NameTitle
PRJNA315192 Complete genomeBacteriaRoutine surveillance of E. coli and Shigella by Public Health England (Health Protection Agency)
PRJNA475191 ContigsCampylobacter jejuniSentinel surveillance of Campylobacter (Public Health England)
PRJNA505131 ContigsCampylobacter jejuniRoutine Sequencing of Campylobacter species (Public Health England)
PRJNA259645 No data linksEscherichia coli O157Public Health England - Escherichia coli O157 (Public Health England)
PRJNA248042 ContigsEscherichia coli O157:H7National Surveillance of STEC O157:H7 in England (Health Protection Agency)
List all 10 'Genome sequencing' projects...

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