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Accession: PRJNA489243 ID: 489243

Vertebrate Genomes Project

Reference genomes for all > 70,000 vertebrate species. The goal of the Vertebrate Genomes Project (VGP) is to generate or collect at least one high-quality, error-free, near gapless, chromosome-level, haplotype phased, and annotated reference genome assembly of all extant vertebrate species, and to utilize those genomes to address fundamental questions in biology, disease, and conservation. This umbrella BioProject ID collects all such assemblies that reach these metrics, generated by the VGP, collaborators, and others that wish to be grouped under VGP reference genomes, and that are publicly available to the community. The aspired metric minimum to be included in this list as of February 2017 are assemblies that have a contig N50 > 1Mb, scaffold N50 > 10Mb, 90% of the assembly assigned to scaffolds that represent chromosomes, base call accuracy of QV40 or greater, and haplotype phased as much as possible.
AccessionPRJNA489243
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismVertebrata[Taxonomy ID: 7742]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata
SubmissionRegistration date: 4-Sep-2018
Genome 10K
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)11576690
WGS master869
Genomic DNA5445
Transcript11455611
SRA Experiments5507
Protein Sequences9934891
Publications
PubMed97
PMC53
Other datasets
BioSample1360
Assembly887
SRA Data Details
ParameterValue
Data volume, Gbases177,086
Data volume, Tbytes67.55
This project encompasses the following 541 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace
No data links
Total

2
7
9
BioProject
accession
Assembly
level
NameTitle
PRJNA1190972 No data linksAmblyopsis spelaeaAmblyopsis spelaea (northern cavefish) genome, fAmbSpe1, haplotype 2
PRJNA1190973 No data linksAmblyopsis spelaeaAmblyopsis spelaea (northern cavefish) genome, fAmbSpe1, haplotype 1
PRJNA1172112 No data linksBradypodion pumilumBradypodion pumilum (Cape dwarf chameleon) genome, rBraPum1, haplotype 1
PRJNA1172113 No data linksBradypodion pumilumBradypodion pumilum (Cape dwarf chameleon) genome, rBraPum1, haplotype 2
PRJNA957802 SRA or TraceCross-species mammalian motor cortex sequencingCross-species mammalian motor cortex sequencing
List all 9 'Genome sequencing' projects...
Umbrella project531
BioProject
accession
OrganismTitle
PRJEB71619Abramis bramaAbramis brama (common bream)
PRJNA562166Acanthisitta chlorisAcanthisitta chloris (Rifleman) genome, bAcaChl1
PRJEB40702Acanthopagrus latusAcanthopagrus latus (yellowfin sea bream)
PRJEB48396Accipiter gentilisAccipiter gentilis (northern goshawk)
PRJEB80343Accipiter nisusAccipiter nisus (Eurasian sparrowhawk)
List all 531 'Umbrella project' projects...
transcriptome1
BioProject
accession
NameTitle
PRJNA516733Various_SpeciesG10K_VGP_Transcriptome_Sequencing

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