6CNM,6ALE


Conserved Protein Domain Family
CaMBD

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pfam02888: CaMBD 
Calmodulin binding domain
Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM). CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.
Statistics
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PSSM-Id: 460739
Aligned: 23 rows
Threshold Bit Score: 90.8057
Created: 21-Mar-2022
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6CNM_A       304 DIQYTKEMKESAARVLQEAW-MFYKHTR------RKESHAARRHQRKLLAAINAFRQVRLKHRKLREqvnsmvDISKMH 375
XP_008111977 239 DIQCAKEMKCSAANVLQEAW-LLYKHTk------RKDGRRARKHHRRLLAAIHMFRHVRMKHRKIRDrvntmvDISKMQ 310
XP_007654812 252 DIQCAKEMKESAARVLQEAW-HFFKHGr------RKEQGASRTHQRRLLAAIHEFRQVRLKHRKLRDqvnslvDISKGQ 323
XP_016791575 304 DIQYTKEMKESAARVLQEAW-MFYKHTr------RKESHAARRHQRKLLAAINAFRQVRLKHRKLREqvnsmvDISKMH 375
1_pfamImport   1 NTKLSKRVRHAAANVVRECW-LLHRTTp------KGNPAEHRRHQRCLLDAIAVFHHLRFKEKMLSDyisemaDLSKMQ 72 
XP_015191865 280 DIQVSKEIQVAAANVLRECW-LLHRSNRs-----KRQGLENRQRQRHLLEAIRIFRYVRLRQRKLRDhanemvDLSKLQ 352
Q11122       559 DSKLAREHKEAAARVLQHTW-HIHKCLQg----sDGGNRRLRTYQRKFLKAIHKFRSVKSEMREFSEnn--sqNNPQMT 630 Caenorhabditis e...
Q8I4D2       324 DSKLTNQRKNAAASVLQETW-FIHKYKKal---hKGDDLRLRHHQRRFLHSINEFRRIKWDQRKLQEkgnsllDVGKLH 398 Caenorhabditis e...
NP_001256595 308 ENNITNEHKNAAACVLQNTWrTVLRARDyqksssRRNQQRLAKMQRMLLCSVITFRKTRWKLRMQMEdeddffTARRAF 386
XP_011418649 337 DVNLDKRLKNEAANVMKSGW-FIYKFRKl-----KANSSMALSYQTKLLEAIYNIRQIKAAQRRLVDasitmtEVNKTQ 409
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