GSE79648[Accession] - GEO DataSets - NCBI

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Select item 2000796481.

Epigenome analysis of dnmt target sites [3ABDKO cell line]

(Submitter supplied) Genome wide DNA methylation profiling of target sites of dnmt3b isoforms in HCT derivative cell line 3ABDKO followed by 5-Aza-CdR treatment. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs

Organism:: Homo sapiens

Type:: Methylation profiling by array

Platform:: GPL13534
24 Samples

Download data: IDAT, TXT

Series

Accession:: GSE79648

ID:: 200079648

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000135342.

Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)

(Submitter supplied) 1 difference between HumanMethylation450_15017482_v.1.1.bpm and HumanMethylation450_15017482_v.1.2.bpm: 1.1: 41636384,NEGATIVE,-99,Negative 604 1.2: 41636384,RESTORATION,Green,Restore Protocol: See manufacturer's website

Organism:: Homo sapiens

1686 Series
1 Related Platform
119315 Samples

Download data: BPM, CSV, TXT, XLSX

Platform

Accession:: GPL13534

ID:: 100013534

Select item 3021004663.

3ABDKO infected with DNMT3L control Day 42 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3L control Day 42 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100466

ID:: 302100466

Select item 3021004654.

3ABDKO infected with DNMT3B3 control Day 42 PBS control

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B3 control Day 42 PBS control

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100465

ID:: 302100465

Select item 3021004645.

3ABDKO infected with DNMT3B1M control Day 42 PBS control

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1M control Day 42 PBS control

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100464

ID:: 302100464

Select item 3021004636.

3ABDKO infected with DNMT3B1 control Day 42 PBS control

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1 control Day 42 PBS control

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100463

ID:: 302100463

Select item 3021004627.

3ABDKO infected with DNMT3L control Day 42 PBS control

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3L control Day 42 PBS control

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100462

ID:: 302100462

Select item 3021004618.

3ABDKO infected with DNMT3B3 control Day 42 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B3 control Day 42 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100461

ID:: 302100461

Select item 3021004609.

3ABDKO infected with DNMT3B1M control Day 42 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1M control Day 42 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100460

ID:: 302100460

Select item 30210045910.

3ABDKO infected with DNMT3B1 control Day 42 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1 control Day 42 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100459

ID:: 302100459

Select item 30210045811.

3ABDKO infected with EV control Day 42 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with EV control Day 42 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100458

ID:: 302100458

Select item 30210045712.

3ABDKO infected with DNMT3L control Day 10 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3L control Day 10 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100457

ID:: 302100457

Select item 30210045613.

3ABDKO infected with DNMT3B3 control Day 10 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B3 control Day 10 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100456

ID:: 302100456

Select item 30210045514.

3ABDKO infected with DNMT3B1M control Day 10 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1M control Day 10 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100455

ID:: 302100455

Select item 30210045415.

3ABDKO infected with DNMT3B1 control Day 10 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1 control Day 10 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100454

ID:: 302100454

Select item 30210045316.

3ABDKO infected with EV control Day 10 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with EV control Day 10 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100453

ID:: 302100453

Select item 30210045217.

3ABDKO infected with DNMT3L control Day 5 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3L control Day 5 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100452

ID:: 302100452

Select item 30210045118.

3ABDKO infected with DNMT3B3 control Day 5 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B3 control Day 5 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100451

ID:: 302100451

Select item 30210045019.

3ABDKO infected with DNMT3B1M control Day 5 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1M control Day 5 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100450

ID:: 302100450

Select item 30210044920.

3ABDKO infected with DNMT3B1 control Day 5 post 24 treatment with 5-Aza-CdR

Organism:: Homo sapiens

Source name:: 3ABDKO infected with DNMT3B1 control Day 5 post 24 treatment with 5-Aza-CdR

Platform:: GPL13534
Series:: GSE68344 GSE79648

Download data: IDAT

Sample

Accession:: GSM2100449

ID:: 302100449

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