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Series GSE79648 Query DataSets for GSE79648
Status Public on Apr 08, 2016
Title Epigenome analysis of dnmt target sites [3ABDKO cell line]
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of target sites of dnmt3b isoforms in HCT derivative cell line 3ABDKO followed by 5-Aza-CdR treatment. The Illumina Infinium 450k Human DNA methylation Beadchip was used to obtain DNA methylation profiles across approximately 450,000 CpGs
 
Overall design Bisulphite converted DNA from the samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip
 
Contributor(s) Duymich CE, Jones PA
Citation(s) 27121154
Submission date Mar 28, 2016
Last update date Mar 22, 2019
Contact name Peter A Jones
Organization name University of Southern California
Department Urology
Lab Peter A. Jones
Street address 1441 Eastlake Ave NOR7344
City Los Angeles
State/province California
ZIP/Postal code 90089
Country USA
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (24)
GSM2100443 3ABDKO infected with EV control Day 0 PBS control
GSM2100444 3ABDKO infected with DNMT3B1 control Day 0 PBS control
GSM2100445 3ABDKO infected with DNMT3B1M control Day 0 PBS control
This SubSeries is part of SuperSeries:
GSE68344 Epigenome analysis of dnmt target sites
Relations
BioProject PRJNA316600

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE79648_Methylated_Intensities.txt.gz 65.9 Mb (ftp)(http) TXT
GSE79648_P-Values.txt.gz 1.9 Mb (ftp)(http) TXT
GSE79648_RAW.tar 376.2 Mb (http)(custom) TAR (of IDAT)
GSE79648_Unmethylated_Intensities.txt.gz 65.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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