|
| Status |
Public on Apr 08, 2016 |
| Title |
3ABDKO infected with DNMT3B1 control Day 5 post 24 treatment with 5-Aza-CdR |
| Sample type |
genomic |
| |
|
| Source name |
3ABDKO infected with DNMT3B1 control Day 5 post 24 treatment with 5-Aza-CdR
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HCT derivative cell line 3ABDKO
treatment: infected with DNMT3B1 control Day 5 post 24 treatment with 5-Aza-CdR
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
cy5 and cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
3ABDKO 3B1 DAY 5
|
| Data processing |
MethylLumi Package
|
| |
|
| Submission date |
Mar 28, 2016 |
| Last update date |
Apr 08, 2016 |
| Contact name |
Peter A Jones |
| Organization name |
University of Southern California
|
| Department |
Urology
|
| Lab |
Peter A. Jones
|
| Street address |
1441 Eastlake Ave NOR7344
|
| City |
Los Angeles |
| State/province |
California |
| ZIP/Postal code |
90089 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE68344 |
Epigenome analysis of dnmt target sites |
| GSE79648 |
Epigenome analysis of dnmt target sites [3ABDKO cell line] |
|
