Similar studies for GEO DataSets (Select 200069999) - GEO DataSets

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Items: 20

Select item 2000699991.

Characterization of AceA regulons in Bradyrhizobium japonicum under desiccation stress

(Submitter supplied) Differential gene expression was analyzed between B. japonicum wild type (Bj110) and aceA mutant (BjΔaceA) exposed to desiccation stress to find AceA regulons under the culture condition.

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE69999

ID:: 200069999

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000091252.

Transcriptional and Physiological Responses of Bradyrhizobium japonicum to Desiccation-Induced Stress

(Submitter supplied) The growth and persistence of rhizobia and bradyrhizobia in soils are negatively impacted by drought conditions. In this study, we used genome-wide transcriptional analyses to obtain a comprehensive understanding of the response of Bradyrhizobium japonicum to drought. Desiccation of cells resulted in the differential expression of 15 to 20% of the 8,480 B. japonicum open reading frames, with considerable differentiation between early (after 4 h) and late (after 24 and 72 h) expressed genes. more...

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
18 Samples

Download data: GPR

Series

Accession:: GSE9125

ID:: 200009125

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000269613.

Bj H2O2 shock vs. non-treatment

(Submitter supplied) Genome-wide transcriptional profiling of cells subjected to a H2O2 shock treatment (10 mM for 10 minutes).

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE26961

ID:: 200026961

Select item 2000269604.

Bj H2O2 prolonged exposure vs. non-treatment

(Submitter supplied) Genome-wide transcriptional profiling of cells exposed to 0.3 mM H2O2 from time of inoculation.

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE26960

ID:: 200026960

Select item 2000121655.

Heterotrophy, chemoautotrophy, and arabinose supplementation in Bradyrhizobium japonicum

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array

Platform:: GPL5341
16 Samples

Download data: GPR

Series

Accession:: GSE12165

ID:: 200012165

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000102986.

Bj_Chemoautotrophy vs. Arabinose supplemented chemoautotrophy

(Submitter supplied) Transcriptional profiling of chemoautotrophically and arabinose supplemented chemoautotrophically grown cells Keywords: Comparison of different lifestyles

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE10298

ID:: 200010298

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000102967.

Bj_Heterotrophy vs. Chemoautotrophy

(Submitter supplied) Transcriptional profiling of chemoautotrophically grown cells Keywords: Comparison of different lifestyles

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
4 Samples

Download data: GPR

Series

Accession:: GSE10296

ID:: 200010296

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000102958.

Bj_Heterotrophy vs. Arabinose supplemented chemoautotrophy

(Submitter supplied) Transcriptional profiling of arabinose supplemented chemoautotrophically grown cells Keywords: Comparison of different lifestyles

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE10295

ID:: 200010295

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000159109.

The PhyR-sigmaEcfG signaling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum

(Submitter supplied) PhyR is an unusual type of response regulator consisting of a receiver domain and an extracytoplasmic function (ECF) sigma factor-like domain. It was recently described as a master regulator of general stress response in Methylobacterium extorquens. Orthologues of this regulator are present in essentially all free-living Alphaproteobacteria. In most of them, phyR is genetically closely linked to a gene encoding an ECF sigma factor. more...

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array

Platform:: GPL3401
18 Samples

Download data: CEL, CHP

Series

Accession:: GSE15910

ID:: 200015910

Select item 20003691310.

Bj_indole-3-acetic acid 1 mM vs. non-treatment

(Submitter supplied) Transcriptional profiling of mid-logarithmic phase cultures exposed to a 1 mM shock treatment of indole-3-acetic acid for 3 hours.

Organism:: Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
6 Samples

Download data: GPR

Series

Accession:: GSE36913

ID:: 200036913

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20001903911.

Whole-Genome Transcriptional analysis of Sulfate and Sulfonate assimilation by Bradyrhizobium japonicum USDA 110

(Submitter supplied) The ability of Bradyrhizobium japonicum and B. elkanii strains to utilize alkane and aromatic sulfonates as sole sources of sulfur for growth was investigated. All of the strains tested were able to utilize alkane sulfonates, but not aromatic sulfonates for growth. Whole-genome transcriptional profiling was used to assess B. japonicum USDA 110 genes involved in growth on alkane sulfonates, as compared to growth on sulfate and cysteine. more...

Organism:: Bradyrhizobium japonicum

Type:: Expression profiling by array

Platform:: GPL5341
12 Samples

Download data: GPR

Series

Accession:: GSE19039

ID:: 200019039

Select item 20007823012.

Gene expression-based investigation of a new role for the glyoxylate shunt in contributing to tolerance to oxidative stress.

(Submitter supplied) Transcriptional profiling in Pseudomonas aeruginosa MPAO1 and its glyoxylate shunt gens transposon insertion mutants (aceA and glcB) was perfomed using microarray analysis with or without 1mM PQ treatment. Based on the gene expression, we investigated role of glyoxylate shunt in P. aeruginosa and found out pathway related with glyoxylate shunt under oxidative stress.

Organism:: Pseudomonas aeruginosa PAO1

Type:: Expression profiling by high throughput sequencing

Platform:: GPL21507
12 Samples

Download data: GPR

Series

Accession:: GSE78230

ID:: 200078230

PubMed Full text in PMC Similar studies

Select item 20012464013.

Transcriptome of Acinetobacter oleivorans DR1 in 0.1 % NaAc_MSB media

(Submitter supplied) We report the trascriptomic information of wild type (WT) and aceA mutant during the growth on 0.1 % NaAc added MSB media

Organism:: Acinetobacter oleivorans

Type:: Expression profiling by high throughput sequencing

Platform:: GPL15630
2 Samples

Download data: TXT

Series

Accession:: GSE124640

ID:: 200124640

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20000847814.

Genome-wide transcript analysis of Bradyrhizobium japonicum bacteroids in soybean root nodules

(Submitter supplied) Expression data from B. japonicum soybean root nodules including a nodulation time-course experiment with soybean nodules harvested at 10, 13, 21 and 31 dpi and transcriptome of bacteroids formed by a mutant defective in the RNA polymerase transcription factor sigma 54. Two reference data sets were established using B. japonicum cells grown in PSY medium under either aerobic or micro-aerobic conditions. more...

Organism:: Bradyrhizobium japonicum; Glycine max; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array

Datasets:: GDS3120 GDS3121 GDS3122
Platform:: GPL3401
71 Samples

Download data: CEL, CHP

Series

Accession:: GSE8478

ID:: 200008478

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 312215.

Transcription factor sigma54-deficient rhizobial bacteroids from determinate soybean root nodules

Comparison of sigma54-deficient mutant strain N50-97 bacteroids with wild type bacteroids, both at 21 days postinoculation. The mutants are able to elicit soybean nodules but unable to carry out symbiotic nitrogen fixation. Results provide insight into the sigma 54 regulon in symbiosis.

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array, count, 2 genotype/variation, 3 growth protocol sets

Platform:: GPL3401
Series:: GSE8478
59 Samples

Download data: CEL, CHP

DataSet

Accession:: GDS3122

ID:: 3122

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 312116.

Rhizobial bacteroids from determinate soybean root nodules: time course

Analysis of soybean nodules at 10, 13, 21, and 31 days postinoculation, having relative symbiotic nitrogen-fixation activities of 9, 95, 100, and 61%, respectively. Results provide insight into genes expressed early and late in bacteroid development.

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array, count, 4 time sets

Platform:: GPL3401
Series:: GSE8478
13 Samples

Download data: CEL, CHP

DataSet

Accession:: GDS3121

ID:: 3121

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 312017.

Rhizobial bacteroids from determinate soybean root nodules

Analysis of bacteroids harvested from soybean nodules at 21 days postinoculation (dpi), a timepoint of maximal nitrogen-fixation activity. Free-living cells grown in aerobic or microaerobic culture also examined. Results provide insight into the genetic basis underlying the conversion to symbiosis.

Organism:: Bradyrhizobium japonicum; Bradyrhizobium diazoefficiens USDA 110

Type:: Expression profiling by array, count, 3 growth protocol sets

Platform:: GPL3401
Series:: GSE8478
42 Samples

Download data: CEL, CHP

DataSet

Accession:: GDS3120

ID:: 3120

PubMed Full text in PMC Similar studies GEO Profiles Analyze DataSet

Select item 20008753818.

Comparative transcriptome analysis of Brucella suis 1330 wild-type and DregA mutant

(Submitter supplied) Investigation of whole genome gene expression level changes in a B. suis 1330 regA mutant, compared to the wild-type strain. The two-component system RegBA of Brucella suis plays a central role in the control of respiratory systems adapted to oxygen deficiency. The mutant strain is affected in long-term persistence in vitro (this study) and in chronic infection in vivo (Abdou, E et al. 2013, Infect.Immun. more...

Organism:: Brucella suis; Brucella suis 1330

Type:: Expression profiling by array

Platform:: GPL22261
6 Samples

Download data: CALLS, PAIR

Series

Accession:: GSE87538

ID:: 200087538

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20006172619.

Stationary phase stimulon and CspC regulon

(Submitter supplied) The cold shock proteins belong to a family of RNA binding proteins presenting a highly conserved domain, called cold shock domain (CSD). They are involved in various cellular processes, including adaptation to low temperature, nutritional stress, cell growth and stationary phase. Here we investigate the role of CspC in C. crescentus stationary phase and the molecular mechanisms underlying gene regulation by this protein. more...