Similar studies for GEO DataSets (Select 200130360) - GEO DataSets

Select item 2001303601.

RNA-seq analysis of Deinococcus metallilatus

(Submitter supplied) RNA-seq analysis of Deinococcus metallilatus of wild type and mutant No. 6 at exponential phase (24 h)

Organism:: Deinococcus metallilatus

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26584
2 Samples

Download data: TXT

Series

Accession:: GSE130360

ID:: 200130360

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000039372.

E. coli K-12 yliH and yceP biofilm expression relative to wild type

(Submitter supplied) Expression in biofilm cells of mutants yceP and yliH relative to biofilm cells of E. coli K-12 wild type strain Keywords: comparison of strain expression profiles

Organism:: Escherichia coli; Escherichia coli K-12

Type:: Expression profiling by array

Platform:: GPL199
4 Samples

Download data

Series

Accession:: GSE3937

ID:: 200003937

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000045623.

E. coli K-12 mutants yceP, trpE, and tnaA biofilm cell 24 hr for indole paper

(Submitter supplied) Gene expression of (i) K-12 yceP biofilms upon addition of 600 µM indole in LB glu medium, (ii) K-12 biofilms due to the trpE mutation in LB glu medium, and (iii) K-12 biofilms due to the tnaA mutation in LB medium. Keywords: indole effect and cell type comparison

Organism:: Escherichia coli K-12; Escherichia coli

Type:: Expression profiling by array

Platform:: GPL199
7 Samples

Download data: CEL, EXP

Series

Accession:: GSE4562

ID:: 200004562

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Select item 2000486564.

GdpS contributes to Staphylococcus aureus biofilm formation by regulation of eDNA release

(Submitter supplied) In Staphylococcus aureus, the role of the GGDEF domain containing protein GdpS remains poorly understood. Previous studies reported that gdpS mutant strains had decreased biofilm formation due to changes in icaADBC expression that were independent of cyclic-di-GMP levels. We deleted gdpS in three unrelated S. aureus isolates, and analyzed the resultant mutants for alterations in biofilm formation, metabolism and transcription. more...

Organism:: Staphylococcus aureus

Type:: Expression profiling by array

Platform:: GPL10537
14 Samples

Download data: TXT

Series

Accession:: GSE48656

ID:: 200048656

Select item 2000226285.

Deinococcus radiodurans R1: wildtype strains vs. DR1790-deletion strains

(Submitter supplied) Transcriptional profiling of comparing wildtype strains with DR1790-deletion strains under normal growth contidions. Keywords: Genetic modification

Organism:: Deinococcus radiodurans

Type:: Expression profiling by array

Platform:: GPL9466
1 Sample

Download data: GPR

Series

Accession:: GSE22628

ID:: 200022628

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Select item 2000177246.

Microarray studies of pqqE disruption mutant vs wild type

(Submitter supplied) This bacterial genome encodes pyrroloquinoline quinone (PQQ) synthase enzyme required for the synthesis of PQQ in bacteria. The gene pqqE encoding PQQ synthase was annotated in Deinococcus radiodurans R1 genome and synthesis of PQQ was shown in this bacterium. PQQ roles as an antioxidant and as an inducer of protein kinase in bacterial system was shown. The pqqE disuption mutant showed several folds decrease in gamma radiation tolerance of wild type cells and strong impairment of DSB repair. more...

Organism:: Deinococcus radiodurans; Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

Type:: Expression profiling by array

Platform:: GPL8947
2 Samples

Download data: GPR

Series

Accession:: GSE17724

ID:: 200017724

Select item 2000177227.

Microarray studies of dr2518 knockout mutant vs wild type

(Submitter supplied) Bacterial cells lacking pyrroloquinoline quinone (PQQ) were sensitive to gamma radiation as compared to wild type cells. Deinococcus radiodurans genome encode for five putative PQQ binding STK domain-containing proteins. The comparison of gamma radiation response of all five-deletion mutants with wild type suggested that dr2518 mutant was hypersensitive to gamma radiation as compared to wild type and other mutants. more...

Organism:: Deinococcus radiodurans; Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

Type:: Expression profiling by array

Platform:: GPL8947
2 Samples

Download data: GPR

Series

Accession:: GSE17722

ID:: 200017722

Select item 2000976568.

Transcriptome Comparison of phoU Homologies: Genes Deletion strain and the Parent Strain in stationary phase (10 h)

(Submitter supplied) Purpose: To compare the transcriptome changes in phoU1(serp0956) or phoU2(serp0316)deletion strain with the parent strain SE1457 in stationary phase (10 h). Methods: Total RNA was isolated and sequenced from the phoU1 deletion strain, phoU2 deletion strain and the parent strain SE1457 in stationary phase (10 h) in triplicate using an illumina high-seq 2500. Raw data was analyzed using TopHat. Genes were considered changed which performed fold-change>=1.5 and FDR<=0.05. more...

Organism:: Staphylococcus epidermidis

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23256
9 Samples

Download data: XLSX

Series

Accession:: GSE97656

ID:: 200097656

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000974009.

Transcriptome Comparison of phoU Homologies Genes Deletion strain and the Parent Strain in log-phase (6 h).

(Submitter supplied) Purpose: To compare the transcriptome changes in phoU1(serp0956) or phoU2(serp0316)deletion strain with the parent strain SE1457 in log-phase (6 h) Methods: Total RNA was isolated and sequenced from the phoU1 deletion strain, phoU2 deletion strain and the parent strain SE1457 in log-phase (6 h) in triplicate using an illumina high-seq 2500. Raw data was analyzed using TopHat. Genes were considered changed which performed fold-change>=1.5 and FDR<=0.05. more...