GEO DataSets

(Submitter supplied) We evaluate the global chromatin changes that occur during the developmental progression and development-to-diapause transition in a closely related set of killifish species.

Organism:

Aphyosemion australe; Austrofundulus limnaeus; Iconisemion striatum; Nothobranchius furzeri

Type:

Genome binding/occupancy profiling by high throughput sequencing

4 related Platforms

30 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Aphyosemion australe; Iconisemion striatum; Nothobranchius furzeri; Austrofundulus limnaeus

Type:

Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

8 related Platforms

175 Samples

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(Submitter supplied) We evaluate the global gene expression changes that occur during a stage-matched developmental window in a closely related set of killifish species.

Organism:

Aphyosemion australe; Iconisemion striatum; Nothobranchius furzeri

Type:

Expression profiling by high throughput sequencing

4 related Platforms

145 Samples

Download data: CSV

(Submitter supplied) The changes in the transcriptome of Fundulus heteroclitus embryos incubated in water or in air from the blastula stage was investigated.

Organism:

Fundulus heteroclitus

Type:

Expression profiling by array

Platform:

GPL9786

42 Samples

Download data: TXT

(Submitter supplied) Global climate change increasingly polarizes environments, presenting unprecedented challenges to many organisms (Smol, 2012). Polarization occurs not only in the spatial dimension, producing greater desert drought and tropical rainfall, for example, but also in the temporal dimension by making a local environment more variable over time. Many organisms survive these fluctuating environmental conditions by manifesting multiple distinct phenotypes through developmental processes that enable phenotypic plasticity (Pigliucci et al., 2006; Parsons et al., 2011). more...

Organism:

Fundulus heteroclitus

Type:

Expression profiling by array

Platform:

GPL14994

36 Samples

Download data: PAIR

(Submitter supplied) The study consists of 12 samples of 39-week-old N. furzeri (skin and brain). Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)

Organism:

Nothobranchius furzeri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19871

12 Samples

Download data: TXT

(Submitter supplied) The RNA-seq data contain 3 tissues (brain, liver, skin) of N.furzeri GRZ Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)

Organism:

Nothobranchius furzeri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17944

15 Samples

Download data: XLS

(Submitter supplied) The study consists of three parts: 1) normal aging in liver and skin (cross-sectional); 2) treatment with rotenone in brain, liver and skin; 3) longitudinal study of 45 fish with different ages at their death measured at two different time points by fin clipping Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)

Organism:

Nothobranchius furzeri

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL17944 GPL19871

185 Samples

Download data: TXT

(Submitter supplied) To study the effect of dietary restriction on killifish, we generated transcriptomes (RNA-seq) for the livers and brains of male and female killifish that had been subjected to different dietary treatements. 

Organism:

Nothobranchius furzeri

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32658

32 Samples

Download data: CSV

(Submitter supplied) Gene expression microarray exprement comparing differential expression between: 1) Early Diapause (ED), 2) Late Diapause (LD), 3) Non-Diapause (ND), 4) Hexane-induced diapause break (HEX).

Organism:

Sarcophaga crassipalpis

Type:

Expression profiling by array

Platform:

GPL10103

24 Samples

Download data: TXT

(Submitter supplied) Subspecies of the Atlantic killifish, Fundulus heteroclitus, differ in their maximum thermal tolerance. To determine whether there is a link between the heat shock response (HSR) and maximum thermal tolerance, we exposed 20ºC acclimated killifish from these subspecies to a 2hr heat shock at 34ºC and examined gene expression during heat shock and recovery using real time quantitative PCR and a heterologous cDNA microarray designed for salmonid fishes. more...

Organism:

Oncorhynchus mykiss; Oncorhynchus tshawytscha; Salmo salar; Fundulus heteroclitus; Coregonus clupeaformis; Osmerus mordax

Type:

Expression profiling by array

Platform:

GPL2716

16 Samples

Download data: MEV