Similar studies for GEO DataSets (Select 200206217) - GEO DataSets

Select item 2002062171.

Regulation of acetate tolerance by unannotated small open reading frame (smORF) polypeptides in Methylomonas sp. DH-1

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Methylomonas sp. DH-1

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL32357 GPL32356
11 Samples

Download data: BW

Series

Accession:: GSE206217

ID:: 200206217

PubMed Full text in PMC Similar studies

Select item 2002062162.

Determination of WatR binding site in Methylomonas sp. DH-1 after lactate adaptive evolution

(Submitter supplied) JHM80 strain was obtained by adaptive evolution of Methylomonas sp. DH-1 strain against 8.0 g/L of lactate. The tolerance against lactate of JHM80 was obtained by the overexpression of watR (weak acid tolerance regulator). In order to discover the target genes of WatR, FLAG epitope tag was added to WatR of JHM80 strain and ChIP-seq was performed.

Organism:: Methylomonas sp. DH-1

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL32357
3 Samples

Download data: BW

Series

Accession:: GSE206216

ID:: 200206216

PubMed Full text in PMC Similar studies

Select item 2002062153.

Transcriptome analysis of Methylomonas sp. DH-1 wild-type and ΔwatR strain according to acetate treatment

(Submitter supplied) WatR (weak acid tolerance regulator) was discovered to contribute to the tolerance against several organic acids. Generally, deletion of watR gene caused decreased tolerance. However, in the case of acetate, the tolerance has been increased according to the absence of watR. In order to determine the relationship between WatR and acetate, we tried to discover the acetate responsive genes in wild-type and ΔwatR strain.

Organism:: Methylomonas sp. DH-1

Type:: Expression profiling by high throughput sequencing

Platform:: GPL32356
8 Samples

Download data: TSV

Series

Accession:: GSE206215

ID:: 200206215

PubMed Full text in PMC Similar studies

Select item 2001014944.

Comparative transcriptome analysis of a novel obligate Methylomonas sp. DH-1 reveals key differences in the transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

(Submitter supplied) We integrated genomic and transcriptomic analysis of a newly isolated obligate Methylomonas sp. DH-1 grown on methane and methanol. Comparative transcriptomic analysis between methane and methanol as a sole carbon source revealed different transcriptional responses of Methylomonas sp. DH-1, especially in C1 assimilation, the secondary metabolites pathways and the oxidative stress related genes

Organism:: Methylomonas sp. DH-1

Type:: Expression profiling by high throughput sequencing

Platform:: GPL23786
6 Samples

Download data: TXT

Series

Accession:: GSE101494

ID:: 200101494

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001632355.

Defining the regulons of Pseudomonas aeruginosa transcriptional regulators

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Pseudomonas aeruginosa

Type:: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing

Platforms:: GPL20881 GPL26913 GPL21297
55 Samples

Download data: BIGWIG

Series

Accession:: GSE163235

ID:: 200163235

PubMed Full text in PMC Similar studies

Select item 2001632346.

The LysR-type transcriptional regulator BsrA (PA2121) is engaged in the control of vital metabolic pathways in Pseudomonas aeruginosa (RNA-seq)

(Submitter supplied) Pseudomonas aeruginosa, a facultative human pathogen causing nosocomial infections, has complex regulatory systems involving many transcriptional regulators. The LTTR family (LysR-Type Transcriptional Regulators) consists of proteins involved in regulation of various processes including stress response, motility, virulence or amino acid metabolism. The aim of this study was characterization of the LysR-type regulator BsrA (PA2121), identified previously as a negative regulator of biofilm formation in P. more...