|
| Status |
Public on Aug 08, 2023 |
| Title |
Regulation of acetate tolerance by unannotated small open reading frame (smORF) polypeptides in Methylomonas sp. DH-1 |
| Organism |
Methylomonas sp. DH-1 |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
37464261 |
| |
| Submission date |
Jun 15, 2022 |
| Last update date |
Aug 09, 2023 |
| Contact name |
Yong-Joon Cho |
| Organization name |
Seoul National University
|
| Street address |
1 Gwanak-ro, Gwanak-gu
|
| City |
Seoul |
| ZIP/Postal code |
08826 |
| Country |
South Korea |
| |
|
| Platforms (2) |
| GPL32356 |
Illumina NovaSeq 6000 (Methylomonas sp. DH-1) |
| GPL32357 |
NextSeq 550 (Methylomonas sp. DH-1) |
|
| Samples (11)
|
| GSM6246283 |
Wild-type before acetate treatment, biol rep 1 |
| GSM6246284 |
Wild-type before acetate treatment, biol rep 2 |
| GSM6246285 |
ΔwatR strain before acetate treatment, biol rep 1 |
| GSM6246286 |
ΔwatR strain before acetate treatment, biol rep 2 |
| GSM6246287 |
Wild-type after 10 min of acetate treatment, biol rep 1 |
| GSM6246288 |
Wild-type after 10 min of acetate treatment, biol rep 2 |
| GSM6246289 |
ΔwatR strain after 10 min of acetate treatment, biol rep 1 |
| GSM6246290 |
ΔwatR strain after 10 min of acetate treatment, biol rep 2 |
| GSM6246291 |
WatR-FLAG strain, input |
| GSM6246292 |
WatR-FLAG strain, biol rep 1 |
| GSM6246293 |
WatR-FLAG strain, biol rep 2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE206215 |
Transcriptome analysis of Methylomonas sp. DH-1 wild-type and ΔwatR strain according to acetate treatment |
| GSE206216 |
Determination of WatR binding site in Methylomonas sp. DH-1 after lactate adaptive evolution |
|
| Relations |
| BioProject |
PRJNA849630 |
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