U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

BCAT2 branched chain amino acid transaminase 2 [ Sus scrofa (pig) ]

Gene ID: 396841, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
BCAT2provided by VGNC
Official Full Name
branched chain amino acid transaminase 2provided by VGNC
Primary source
VGNC:VGNC:85774
See related
Ensembl:ENSSSCG00000003139
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
BCATM
Expression
Ubiquitous expression in heart (RPKM 43.6), psoas major muscle (RPKM 37.2) and 7 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See BCAT2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (54107682..54123595, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (49855038..49870815, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 1 (H blood group) Neighboring gene fucosyltransferase 1 (H blood group) Neighboring gene fibroblast growth factor 21 Neighboring gene uncharacterized LOC106510565 Neighboring gene hydroxysteroid 17-beta dehydrogenase 14 Neighboring gene pleckstrin homology domain containing A4 Neighboring gene protein phosphatase 1 regulatory subunit 15A

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cloning of the rat and human mitochondrial branched chain aminotransferases (BCATm). Bledsoe RK, et al. Biochim Biophys Acta, 1997 Apr 25. PMID 9165094
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables branched-chain-amino-acid transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in L-valine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
branched-chain-amino-acid aminotransferase, mitochondrial
Names
branched chain aminotransferase 2, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    54107682..54123595 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094703.1 → XP_020950362.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X5

    UniProtKB/TrEMBL
    A0A4X1VUQ6, A0A8D0XVP7
    Conserved Domains (1) summary
    cd01557
    Location:94 → 346
    BCAT_beta_family; Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The ...

  2. XM_021094702.1 → XP_020950361.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A5G2Q850
    Conserved Domains (1) summary
    cd01557
    Location:132 → 384
    BCAT_beta_family; Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The ...

  3. XM_013998609.2 → XP_013854063.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A5G2Q850
    Conserved Domains (2) summary
    PRK13357
    Location:78 → 391
    PRK13357; branched-chain amino acid aminotransferase; Provisional
    cd01557
    Location:126 → 381
    BCAT_beta_family; BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and ...

  4. XM_013998608.2 → XP_013854062.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A5G2Q850, A0A5G2RDA5
    Related
    ENSSSCP00000068679.1, ENSSSCT00000090331.2
    Conserved Domains (2) summary
    PRK13357
    Location:78 → 431
    PRK13357; branched-chain amino acid aminotransferase; Provisional
    cd01557
    Location:126 → 421
    BCAT_beta_family; BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and ...

  5. XM_003127278.5 → XP_003127326.2  branched-chain-amino-acid aminotransferase, mitochondrial isoform X3

    See identical proteins and their annotated locations for XP_003127326.2

    UniProtKB/TrEMBL
    A0A287B3D6, A0A287BER5, A0A4X1W1Q7, A0A8D0R3Z4
    Related
    ENSSSCP00000055040.1, ENSSSCT00000052461.3
    Conserved Domains (2) summary
    PRK13357
    Location:40 → 393
    PRK13357; branched-chain amino acid aminotransferase; Provisional
    cd01557
    Location:88 → 383
    BCAT_beta_family; BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and ...

  6. XM_005664688.3 → XP_005664745.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X7

    UniProtKB/TrEMBL
    A0A287B3D6, A0A8D0R3Z4
    Related
    ENSSSCP00000060164.1, ENSSSCT00000075055.2
    Conserved Domains (2) summary
    PRK13357
    Location:1 → 353
    PRK13357; branched-chain amino acid aminotransferase; Provisional
    cd01557
    Location:48 → 343
    BCAT_beta_family; BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and ...

  7. XM_013998610.2 → XP_013854064.1  branched-chain-amino-acid aminotransferase, mitochondrial isoform X6

    UniProtKB/TrEMBL
    A0A4X1W0J6, A0A8D1TR22
    Conserved Domains (2) summary
    PRK13357
    Location:40 → 353
    PRK13357; branched-chain amino acid aminotransferase; Provisional
    cd01557
    Location:88 → 343
    BCAT_beta_family; BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O19098.1 GenPept UniProtKB/Swiss-Prot:O19098

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.