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f-cup flyers-cup [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41677, updated on 9-Dec-2024

Summary

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Official Symbol
f-cupprovided by FlyBase
Official Full Name
flyers-cupprovided by FlyBase
Primary source
FLYBASE:FBgn0028487
Locus tag
Dmel_CG9611
See related
AllianceGenome:FB:FBgn0028487
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:GH09045; CG9611; Dmel\CG9611
Summary
Predicted to be involved in intracellular signal transduction. Is expressed in several structures, including anterior endoderm; embryonic/larval midgut; embryonic/larval midgut primordium; ganglia; and male germline cell. Orthologous to human LRRC40 (leucine rich repeat containing 40). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See f-cup in Genome Data Viewer
Location:
87F11-87F11; 3-54 cM
Exon count:
14
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (13695263..13700838, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (9520985..9526560, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Lkb1 kinase Neighboring gene oocyte maintenance defects Neighboring gene falafel Neighboring gene uncharacterized protein Neighboring gene neither inactivation nor afterpotential B Neighboring gene Adenosine deaminase-related growth factor D Neighboring gene Adenosine deaminase-related growth factor C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The CPEB protein Orb2 has multiple functions during spermatogenesis in Drosophila melanogaster. Xu S, et al. PLoS Genet, 2012. PMID 23209437, Free PMC Article
  2. Antagonistic pleiotropy for life-history traits at the gene expression level. Bochdanovits Z, et al. Proc Biol Sci, 2004 Feb 7. PMID 15101424, Free PMC Article
  3. Post-meiotic transcription in Drosophila testes. Barreau C, et al. Development, 2008 Jun. PMID 18434411
  4. Regulation of lifespan, metabolism, and stress responses by the Drosophila SH2B protein, Lnk. Slack C, et al. PLoS Genet, 2010 Mar 19. PMID 20333234, Free PMC Article
  5. Spatially revealed roles for lncRNAs in Drosophila spermatogenesis, Y chromosome function and evolution. Shao Z, et al. Nat Commun, 2024 May 7. PMID 38714658, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in intracellular signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
flyers-cup
Names
CG9611-PA
CG9611-PB
CG9611-PC
CG9611-PD
CG9611-PE
CG9611-PF
CG9611-PG
CG9611-PH
CG9611-PI
f-cup-PA
f-cup-PB
f-cup-PC
f-cup-PD
f-cup-PE
f-cup-PF
f-cup-PG
f-cup-PH
f-cup-PI
gp150-like

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    13695263..13700838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001104303.2 → NP_001097773.1  flyers-cup, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097773.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JQZ8, Q29QD5
    Conserved Domains (3) summary
    cd00116
    Location:34 → 256
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:37 → 59
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:59 → 114
    LRR_8; Leucine rich repeat

  2. NM_169550.2 → NP_731852.2  flyers-cup, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731852.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86NW5, Q9V3X1
    Related
    FBpp0082311
    Conserved Domains (3) summary
    cd00116
    Location:155 → 377
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:158 → 180
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:180 → 235
    LRR_8; Leucine rich repeat

  3. NM_001275615.1 → NP_001262544.1  flyers-cup, isoform F [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262544.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KG03
    Conserved Domains (3) summary
    cd00116
    Location:155 → 377
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:158 → 180
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:180 → 235
    LRR_8; Leucine rich repeat

  4. NM_001104302.2 → NP_001097772.1  flyers-cup, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097772.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q29QD5, Q6NLJ7
    Conserved Domains (3) summary
    cd00116
    Location:82 → 304
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:107 → 162
    LRR_8; Leucine rich repeat

  5. NM_142049.3 → NP_650306.1  flyers-cup, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650306.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KSK8, Q86NW5
    Related
    FBpp0082312
    Conserved Domains (3) summary
    cd00116
    Location:112 → 334
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:115 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:137 → 192
    LRR_8; Leucine rich repeat

  6. NM_001275617.1 → NP_001262546.1  flyers-cup, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262546.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KGK9, Q29QD5
    Conserved Domains (3) summary
    cd00116
    Location:112 → 334
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:115 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:137 → 192
    LRR_8; Leucine rich repeat

  7. NM_001275616.1 → NP_001262545.1  flyers-cup, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262545.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4KFW1
    Conserved Domains (3) summary
    cd00116
    Location:112 → 334
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:115 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:137 → 192
    LRR_8; Leucine rich repeat

  8. NM_001275618.1 → NP_001262547.1  flyers-cup, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001262547.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q29QD5, Q6NLJ7
    Conserved Domains (3) summary
    cd00116
    Location:82 → 304
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:107 → 162
    LRR_8; Leucine rich repeat

  9. NM_001104304.2 → NP_001097774.1  flyers-cup, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097774.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JQZ7, Q86NW5
    Conserved Domains (3) summary
    cd00116
    Location:82 → 304
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:85 → 107
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:107 → 162
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4KFW1 A0A0B4KFW1
A0A0B4KG03 A0A0B4KG03
A0A0B4KGK9 A0A0B4KGK9
A8JQZ7 A8JQZ7
A8JQZ8 A8JQZ8
Q6NLJ7 Q6NLJ7
Q7KSK8 Q7KSK8
Q86NW5 Q86NW5
Q9V3X1 Q9V3X1

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