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    Tsga13 testis specific, 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688848, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tsga13provided by RGD
    Official Full Name
    testis specific, 13provided by RGD
    Primary source
    RGD:1584118
    See related
    EnsemblRapid:ENSRNOG00000011108 AllianceGenome:RGD:1584118
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human TSGA13 (testis specific 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 63.0) See more
    Orthologs
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    Genomic context

    See Tsga13 in Genome Data Viewer
    Location:
    4q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (60469136..60490218, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (59501773..59522925, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (58195424..58216712, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene mesoderm specific transcript Neighboring gene COPI coat complex subunit gamma 2 Neighboring gene uncharacterized LOC134486571 Neighboring gene interferon-induced transmembrane protein 2 pseudogene Neighboring gene KLF transcription factor 14

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    testis-specific gene 13 protein
    Names
    testis specific gene A13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107851.1NP_001101321.1  testis-specific gene 13 protein

      See identical proteins and their annotated locations for NP_001101321.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473959
      UniProtKB/TrEMBL
      A6IEI1, D3ZMN0
      Related
      ENSRNOP00000015135.5, ENSRNOT00000015134.9
      Conserved Domains (1) summary
      pfam14994
      Location:3268
      TSGA13; Testis-specific gene 13 protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      60469136..60490218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108375.2XP_038964303.1  testis-specific gene 13 protein isoform X1

      Conserved Domains (1) summary
      pfam14994
      Location:1239
      TSGA13; Testis-specific gene 13 protein
    2. XM_039108376.2XP_038964304.1  testis-specific gene 13 protein isoform X2

      Conserved Domains (1) summary
      pfam14994
      Location:1124
      TSGA13; Testis-specific gene 13 protein