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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001080551.3 → NP_001074020.3 protein shortage in chiasmata 1 ortholog isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at an alternate start codon, compared to variant 1. It encodes isoform 2, which is shorter and has a distinct N-terminus, compared to isoform 1.
- Source sequence(s)
-
AL135787, AL356491
- Consensus CDS
-
CCDS43863.1
- Related
- ENSP00000378259.3, ENST00000394779.7
- Conserved Domains (1) summary
-
- pfam17825
Location:46 → 1405
- DUF5587; Family of unknown function (DUF5587)
-
NM_001378211.1 → NP_001365140.1 protein shortage in chiasmata 1 ortholog isoform 4
Status: VALIDATED
- Source sequence(s)
-
AL135787, AL354877, AL356491
- Consensus CDS
-
CCDS94461.1
- UniProtKB/TrEMBL
-
A0A804HLJ8
- Related
- ENSP00000508388.1, ENST00000682961.1
- Conserved Domains (1) summary
-
- pfam17825
Location:65 → 1508
- DUF5587; Family of unknown function (DUF5587)
-
NM_001378212.1 → NP_001365141.1 protein shortage in chiasmata 1 ortholog isoform 5
Status: VALIDATED
- Source sequence(s)
-
AL135787, AL356491
- Consensus CDS
-
CCDS94459.1
- UniProtKB/TrEMBL
-
A6PVK7
- Related
- ENSP00000378257.4, ENST00000394777.8
- Conserved Domains (1) summary
-
- pfam17825
Location:46 → 1370
- DUF5587; Family of unknown function (DUF5587)
-
NM_173521.5 → NP_775792.5 protein shortage in chiasmata 1 ortholog isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AL135787, AL354877, AL356491
- Consensus CDS
-
CCDS6781.3
- UniProtKB/Swiss-Prot
- A2A2V3, Q2M1H8, Q5VXU9, Q96M73
- Related
- ENSP00000322108.4, ENST00000318737.8
- Conserved Domains (1) summary
-
- pfam17825
Location:1 → 1444
- DUF5587; Family of unknown function (DUF5587)
RNA
-
NR_109816.2 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains an alternate 5' exon structure compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL135787, AL354877, AL356491
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
111686171..111794937 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017014340.2 → XP_016869829.1 protein shortage in chiasmata 1 ortholog isoform X3
- Conserved Domains (1) summary
-
- pfam17825
Location:74 → 1395
- DUF5587; Family of unknown function (DUF5587)
-
XM_006716975.3 → XP_006717038.1 protein shortage in chiasmata 1 ortholog isoform X1
- Conserved Domains (1) summary
-
- pfam17825
Location:65 → 1473
- DUF5587; Family of unknown function (DUF5587)
-
XM_011518302.3 → XP_011516604.1 protein shortage in chiasmata 1 ortholog isoform X2
See identical proteins and their annotated locations for XP_011516604.1
- UniProtKB/Swiss-Prot
- A2A2V3, Q2M1H8, Q5VXU9, Q96M73
- Conserved Domains (1) summary
-
- pfam17825
Location:1 → 1444
- DUF5587; Family of unknown function (DUF5587)
-
XM_011518303.2 → XP_011516605.1 protein shortage in chiasmata 1 ortholog isoform X2
See identical proteins and their annotated locations for XP_011516605.1
- UniProtKB/Swiss-Prot
- A2A2V3, Q2M1H8, Q5VXU9, Q96M73
- Related
- ENSP00000363405.3, ENST00000374287.7
- Conserved Domains (1) summary
-
- pfam17825
Location:1 → 1444
- DUF5587; Family of unknown function (DUF5587)
-
XM_047422865.1 → XP_047278821.1 protein shortage in chiasmata 1 ortholog isoform X5
- UniProtKB/TrEMBL
-
Q6ZU10
-
XM_011518306.2 → XP_011516608.1 protein shortage in chiasmata 1 ortholog isoform X4
- Conserved Domains (1) summary
-
- pfam17825
Location:10 → 1319
- DUF5587; Family of unknown function (DUF5587)
-
XM_017014341.2 → XP_016869830.1 protein shortage in chiasmata 1 ortholog isoform X7
- Conserved Domains (1) summary
-
- pfam17825
Location:65 → 1064
- DUF5587; Family of unknown function (DUF5587)
-
XM_047422866.1 → XP_047278822.1 protein shortage in chiasmata 1 ortholog isoform X6
-
XM_011518309.2 → XP_011516611.1 protein shortage in chiasmata 1 ortholog isoform X7
- Conserved Domains (1) summary
-
- pfam17825
Location:65 → 1064
- DUF5587; Family of unknown function (DUF5587)
-
XM_047422868.1 → XP_047278824.1 protein shortage in chiasmata 1 ortholog isoform X9
-
XM_047422867.1 → XP_047278823.1 protein shortage in chiasmata 1 ortholog isoform X8
- UniProtKB/TrEMBL
-
A0A804HK82
- Related
- ENSP00000507813.1, ENST00000683944.1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
123857529..123984501 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054362153.1 → XP_054218128.1 protein shortage in chiasmata 1 ortholog isoform X10
-
XM_054362154.1 → XP_054218129.1 protein shortage in chiasmata 1 ortholog isoform X2
-
XM_054362155.1 → XP_054218130.1 protein shortage in chiasmata 1 ortholog isoform X2
-
XM_054362157.1 → XP_054218132.1 protein shortage in chiasmata 1 ortholog isoform X5
- UniProtKB/TrEMBL
-
Q6ZU10
-
XM_054362156.1 → XP_054218131.1 protein shortage in chiasmata 1 ortholog isoform X4