U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC421195 protocadherin Fat 4-like [ Gallus gallus (chicken) ]

    Gene ID: 421195, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Symbol
    LOC421195provided by CGNC
    Full Name
    protocadherin Fat 4-likeprovided by CGNC
    Primary source
    CGNC:51434
    See related
    Ensembl:ENSGALG00010019281
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC421195 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (2224768..2271577)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (2191496..2238308)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene pseudouridylate synthase 10 Neighboring gene KIAA1841 Neighboring gene peroxisomal biogenesis factor 13 Neighboring gene AHA1, activator of heat shock 90kDa protein ATPase homolog 2 Neighboring gene ubiquitin specific peptidase 34 Neighboring gene uncharacterized LOC107052835

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protocadherin Fat 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2224768..2271577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040697746.2 → XP_040553680.1  protocadherin Fat 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Conserved Domains (2) summary
      cd11304
      Location:808 → 907
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:648 → 699
      CA; Cadherin repeats

    2. XM_040697747.2 → XP_040553681.1  protocadherin Fat 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Conserved Domains (2) summary
      cd11304
      Location:808 → 907
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:648 → 699
      CA; Cadherin repeats

    3. XM_419273.7 → XP_419273.3  protocadherin Fat 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Related
      ENSGALP00010027766.1, ENSGALT00010046623.1
      Conserved Domains (2) summary
      cd11304
      Location:763 → 862
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:603 → 654
      CA; Cadherin repeats

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      2191496..2238308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040667003.2 → XP_040522937.1  protocadherin Fat 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Conserved Domains (2) summary
      cd11304
      Location:808 → 907
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:648 → 699
      CA; Cadherin repeats

    2. XM_040667004.2 → XP_040522938.1  protocadherin Fat 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Conserved Domains (2) summary
      cd11304
      Location:808 → 907
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:648 → 699
      CA; Cadherin repeats

    3. XM_040667006.2 → XP_040522940.1  protocadherin Fat 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z9A4
      Conserved Domains (2) summary
      cd11304
      Location:763 → 862
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:603 → 654
      CA; Cadherin repeats
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials