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    NF-YB6 nuclear factor Y, subunit B6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834818, updated on 18-Sep-2024

    Summary

    Official Symbol
    NF-YB6
    Official Full Name
    nuclear factor Y, subunit B6
    Primary source
    TAIR:AT5G47670
    Locus tag
    AT5G47670
    See related
    Araport:AT5G47670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; L1L; LEC1-LIKE; MNJ7.26; MNJ7_26; nuclear factor Y; subunit B6; subunit B6''
    Summary
    Encodes LEC1-Like (L1L), closely related to LEC1 (Leafy Cotyledon1). Functions as a regulator of embryo development.
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    Genomic context

    See NF-YB6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (19314778..19316169)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene nuclear factor Y, subunit B2 Neighboring gene nudix hydrolase homolog 2 Neighboring gene Homeodomain-like superfamily protein Neighboring gene tRNA (guanine(9)-N1)-methyltransferase-like protein Neighboring gene binding protein Neighboring gene 60S acidic ribosomal protein family

    Bibliography

    Interactions

    General gene information

    NM_001085258.1
    NM_001344740.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex  
    located_in nucleus  

    General protein information

    Preferred Names
    nuclear factor Y, subunit B6
    NP_001078727.1
    • ''nuclear factor Y, subunit B6'' (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1453 Blast hits to 1453 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 485; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).
    NP_001318754.1
    • ''nuclear factor Y, subunit B6'' (NF-YB6); FUNCTIONS IN: transcription activator binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of gene-specific transcription, regulation of transcription; LOCATED IN: nucleus, intracellular; EXPRESSED IN: embryo; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G21970.1); Has 1452 Blast hits to 1452 proteins in 242 species: Archae - 2; Bacteria - 0; Metazoa - 484; Fungi - 345; Plants - 522; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19314778..19316169
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124141.4 → NP_199578.2  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199578.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84W66, Q8GV55, Q9FGJ0
      UniProtKB/TrEMBL
      A0A178UB79, A0A5S9YD16
      Conserved Domains (1) summary
      pfam00808
      Location:61 → 126
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    2. NM_001344740.1 → NP_001318754.1  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84W66, Q8GV55, Q9FGJ0
      UniProtKB/TrEMBL
      A0A178UB79, A0A5S9YD16
      Conserved Domains (1) summary
      pfam00808
      Location:61 → 126
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    3. NM_001085258.1 → NP_001078727.1  nuclear factor Y, subunit B6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078727.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q84W66
      Conserved Domains (1) summary
      pfam00808
      Location:33 → 97
      CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
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