U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ttc6 tetratricopeptide repeat domain 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366631, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Ttc6provided by RGD
    Official Full Name
    tetratricopeptide repeat domain 6provided by RGD
    Primary source
    RGD:1560556
    See related
    EnsemblRapid:ENSRNOG00000022791 AllianceGenome:RGD:1560556
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560556
    Summary
    Orthologous to human TTC6 (tetratricopeptide repeat domain 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 74.0), Lung (RPKM 13.9) and 2 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ttc6 in Genome Data Viewer
    Location:
    6q23
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (80872055..81103170)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (75136827..75368176)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (78567453..78779151)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene mirror-image polydactyly 1 Neighboring gene forkhead box A1 Neighboring gene U2 spliceosomal RNA Neighboring gene ribosomal protein S6, pseudogene 8 Neighboring gene U6 spliceosomal RNA Neighboring gene lactate dehydrogenase A, pseudogene 17

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    tetratricopeptide repeat protein 6

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432095.1 → NP_001419024.1  tetratricopeptide repeat protein 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A8I5ZWF2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      80872055..81103170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063262645.1 → XP_063118715.1  tetratricopeptide repeat protein 6 isoform X1

    2. XM_063262644.1 → XP_063118714.1  tetratricopeptide repeat protein 6 isoform X1

    3. XM_063262650.1 → XP_063118720.1  tetratricopeptide repeat protein 6 isoform X5

      Related
      ENSRNOP00000109108.1, ENSRNOT00000144757.1

    4. XM_063262647.1 → XP_063118717.1  tetratricopeptide repeat protein 6 isoform X3

    5. XM_063262652.1 → XP_063118722.1  tetratricopeptide repeat protein 6 isoform X7

    6. XM_063262646.1 → XP_063118716.1  tetratricopeptide repeat protein 6 isoform X2

    7. XM_063262648.1 → XP_063118718.1  tetratricopeptide repeat protein 6 isoform X4

      Related
      ENSRNOP00000081976.1, ENSRNOT00000098973.2

    8. XM_063262651.1 → XP_063118721.1  tetratricopeptide repeat protein 6 isoform X6

      Related
      ENSRNOP00000032088.6, ENSRNOT00000032743.8

    9. XM_039113206.2 → XP_038969134.1  tetratricopeptide repeat protein 6 isoform X11

      Conserved Domains (3) summary
      PTZ00449
      Location:387 → 463
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      COG0457
      Location:1030 → 1311
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:970 → 998
      TPR; TPR repeat [structural motif]

    10. XM_039113209.2 → XP_038969137.1  tetratricopeptide repeat protein 6 isoform X12

      Conserved Domains (4) summary
      PTZ00449
      Location:387 → 463
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      COG0457
      Location:878 → 1035
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR02917
      Location:894 → 1234
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:970 → 998
      TPR; TPR repeat [structural motif]

    11. XM_039113210.2 → XP_038969138.1  tetratricopeptide repeat protein 6 isoform X12

      Conserved Domains (4) summary
      PTZ00449
      Location:387 → 463
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      COG0457
      Location:878 → 1035
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR02917
      Location:894 → 1234
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:970 → 998
      TPR; TPR repeat [structural motif]

    12. XM_039113207.2 → XP_038969135.1  tetratricopeptide repeat protein 6 isoform X12

      Conserved Domains (4) summary
      PTZ00449
      Location:387 → 463
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      COG0457
      Location:878 → 1035
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR02917
      Location:894 → 1234
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:970 → 998
      TPR; TPR repeat [structural motif]

    13. XM_063262653.1 → XP_063118723.1  tetratricopeptide repeat protein 6 isoform X8

    14. XM_063262655.1 → XP_063118725.1  tetratricopeptide repeat protein 6 isoform X10

    15. XM_063262654.1 → XP_063118724.1  tetratricopeptide repeat protein 6 isoform X9

    16. XM_063262656.1 → XP_063118726.1  tetratricopeptide repeat protein 6 isoform X10

    17. XM_063262658.1 → XP_063118728.1  tetratricopeptide repeat protein 6 isoform X14

    18. XM_063262657.1 → XP_063118727.1  tetratricopeptide repeat protein 6 isoform X13

    RNA

    1. XR_005505974.2 RNA Sequence

    2. XR_005505975.2 RNA Sequence

    3. XR_005505976.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001108983.1: Suppressed sequence

      Description
      NM_001108983.1: This RefSeq was removed because the CDS was partial.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.