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    RRBP1 ribosome binding protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 396414, updated on 17-Aug-2024

    Summary

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    Symbol
    RRBP1provided by CGNC
    Full Name
    ribosome binding protein 1provided by CGNC
    Primary source
    CGNC:6587
    See related
    Ensembl:ENSGALG00010018724
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RRBP1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (15203650..15239753)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (15117909..15154010)

    Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene mitochondrial genome maintenance exonuclease 1 Neighboring gene sorting nexin 5 Neighboring gene destrin, actin depolymerizing factor Neighboring gene uncharacterized LOC124418353

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of an extracellular 130-kDa protein involved in early cardiac morphogenesis. Rezaee M, et al. J Biol Chem, 1993 Jul 5. PMID 7686155
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribosome-binding protein 1
    Names
    EDT-soluble/130 kDa protein
    ribosome binding protein 1 homolog 180kDa (dog)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001257346.3 → NP_001244275.2  ribosome-binding protein 1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000062
      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      15203650..15239753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046938579.1 → XP_046794535.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Related
      ENSGALP00010027021.1, ENSGALT00010045256.1

    2. XM_040696905.2 → XP_040552839.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_040696913.2 → XP_040552847.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:288 → 953
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_015283452.4 → XP_015138938.2  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. XM_040696911.2 → XP_040552845.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4
      Related
      ENSGALP00010027016.1, ENSGALT00010045250.1
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:288 → 953
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. XM_040696909.2 → XP_040552843.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    7. XM_046938582.1 → XP_046794538.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    8. XM_040696903.2 → XP_040552837.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    9. XM_040696904.2 → XP_040552838.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    10. XM_040696912.2 → XP_040552846.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:288 → 953
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    11. XM_040696908.2 → XP_040552842.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    12. XM_046938581.1 → XP_046794537.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    13. XM_040696907.2 → XP_040552841.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    14. XM_046938580.1 → XP_046794536.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    15. XM_015283455.4 → XP_015138941.2  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:288 → 953
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    16. XM_040696910.2 → XP_040552844.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8
      Conserved Domains (2) summary
      PRK12323
      Location:113 → 310
      PRK12323; DNA polymerase III subunit gamma/tau
      TIGR02168
      Location:286 → 992
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      15117909..15154010
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046913319.1 → XP_046769275.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    2. XM_046913314.1 → XP_046769270.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    3. XM_046913325.1 → XP_046769281.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    4. XM_046913313.1 → XP_046769269.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    5. XM_046913323.1 → XP_046769279.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    6. XM_046913316.1 → XP_046769272.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    7. XM_046913328.1 → XP_046769284.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    8. XM_046913318.1 → XP_046769274.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    9. XM_046913317.1 → XP_046769273.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    10. XM_046913324.1 → XP_046769280.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    11. XM_046913320.1 → XP_046769276.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    12. XM_046913327.1 → XP_046769283.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    13. XM_046913315.1 → XP_046769271.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    14. XM_046913326.1 → XP_046769282.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    15. XM_046913322.1 → XP_046769278.1  ribosome-binding protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z8S4

    16. XM_046913321.1 → XP_046769277.1  ribosome-binding protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z8S8

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001199440.1: Suppressed sequence

      Description
      NM_001199440.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from dog: RRBP1 (GeneID:403809).
    Nucleotide Protein Strain
    Heading Accession and Version

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