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    atad3 ATPase family AAA domain containing 3 [ Sphaeramia orbicularis (orbiculate cardinalfish) ]

    Gene ID: 115418826, updated on 17-Mar-2024

    Summary

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    Gene symbol
    atad3
    Gene description
    ATPase family AAA domain containing 3
    See related
    Ensembl:ENSSORG00005022345
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sphaeramia orbicularis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Kurtiformes; Apogonoidei; Apogonidae; Apogoninae; Sphaeramia
    Orthologs
    zebrafish all
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    Genomic context

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    See atad3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current fSphaOr1.1 (GCF_902148855.1) 5 NC_043961.1 (31064772..31075372, complement)

    Chromosome 5 - NC_043961.1Genomic Context describing neighboring genes Neighboring gene SSU72 homolog, RNA polymerase II CTD phosphatase Neighboring gene transmembrane protein 240b Neighboring gene mitochondrial ribosomal protein L20 Neighboring gene succinate dehydrogenase complex, subunit B, iron sulfur (Ip)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_043961.1 Chromosome 5 Reference fSphaOr1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATPase family AAA domain-containing protein 3-A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sphaeramia orbicularis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSphaOr1.1

    Genomic

    1. NC_043961.1 Reference fSphaOr1.1

      Range
      31064772..31075372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030133338.1 → XP_029989198.1  ATPase family AAA domain-containing protein 3-A-like isoform X16

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:704 → 875
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    2. XM_030133325.1 → XP_029989185.1  ATPase family AAA domain-containing protein 3-A-like isoform X4

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:823 → 1009
      rne; ribonuclease E; Reviewed
      PRK14951
      Location:945 → 1090
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    3. XM_030133340.1 → XP_029989200.1  ATPase family AAA domain-containing protein 3-A-like isoform X17

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:702 → 864
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    4. XM_030133336.1 → XP_029989196.1  ATPase family AAA domain-containing protein 3-A-like isoform X14

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK07994
      Location:855 → 974
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      PRK10811
      Location:723 → 909
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    5. XM_030133341.1 → XP_029989201.1  ATPase family AAA domain-containing protein 3-A-like isoform X18

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:681 → 849
      rne; ribonuclease E; Reviewed
      PRK14951
      Location:790 → 911
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    6. XM_030133337.1 → XP_029989197.1  ATPase family AAA domain-containing protein 3-A-like isoform X15

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:541 → 974
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:750 → 916
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    7. XM_030133332.1 → XP_029989192.1  ATPase family AAA domain-containing protein 3-A-like isoform X10

      UniProtKB/TrEMBL
      A0A673CAI3
      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:808 → 979
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    8. XM_030133335.1 → XP_029989195.1  ATPase family AAA domain-containing protein 3-A-like isoform X13

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK07994
      Location:869 → 988
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      PRK10811
      Location:731 → 923
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    9. XM_030133330.1 → XP_029989190.1  ATPase family AAA domain-containing protein 3-A-like isoform X8

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:833 → 1004
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    10. XM_030133327.1 → XP_029989187.1  ATPase family AAA domain-containing protein 3-A-like isoform X6

      Related
      ENSSORP00005049173.1, ENSSORT00005050371.1
      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:646 → 1031
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:807 → 986
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    11. XM_030133331.1 → XP_029989191.1  ATPase family AAA domain-containing protein 3-A-like isoform X9

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:674 → 1047
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:825 → 989
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    12. XM_030133324.1 → XP_029989184.1  ATPase family AAA domain-containing protein 3-A-like isoform X3

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:674 → 1056
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:825 → 1011
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    13. XM_030133323.1 → XP_029989183.1  ATPase family AAA domain-containing protein 3-A-like isoform X2

      Conserved Domains (6) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:639 → 1039
      PHA03247; large tegument protein UL36; Provisional
      PRK07994
      Location:982 → 1101
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
      PRK10811
      Location:808 → 992
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    14. XM_030133334.1 → XP_029989194.1  ATPase family AAA domain-containing protein 3-A-like isoform X12

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:787 → 949
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    15. XM_030133329.1 → XP_029989189.1  ATPase family AAA domain-containing protein 3-A-like isoform X7

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:639 → 1016
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:808 → 994
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    16. XM_030133333.1 → XP_029989193.1  ATPase family AAA domain-containing protein 3-A-like isoform X11

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PHA03247
      Location:674 → 1028
      PHA03247; large tegument protein UL36; Provisional
      PRK10811
      Location:808 → 970
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    17. XM_030133326.1 → XP_029989186.1  ATPase family AAA domain-containing protein 3-A-like isoform X5

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:848 → 1028
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    18. XM_030133322.1 → XP_029989182.1  ATPase family AAA domain-containing protein 3-A-like isoform X1

      Conserved Domains (5) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:848 → 1034
      rne; ribonuclease E; Reviewed
      PRK14951
      Location:970 → 1115
      PRK14951; DNA polymerase III subunits gamma and tau; Provisional
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)

    19. XM_030133342.1 → XP_029989202.1  ATPase family AAA domain-containing protein 3-A-like isoform X19

      Conserved Domains (4) summary
      PRK10733
      Location:248 → 574
      hflB; ATP-dependent zinc metalloprotease FtsH
      PRK10811
      Location:648 → 812
      rne; ribonuclease E; Reviewed
      pfam00004
      Location:342 → 467
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam12037
      Location:35 → 280
      DUF3523; Domain of unknown function (DUF3523)
    Nucleotide Protein
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