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| Status |
Public on Jul 28, 2010 |
| Title |
NimbleGen Drosophila melanogaster Whole Genome 2.1M tiling array |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Drosophila melanogaster |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
See manufacturer's web site www.nimblegen.com
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| Catalog number |
05542308001 |
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| Description |
DM5_Tiling_Array
Platform annotations based on Drosophila melanogaster, BDGP Release 5, April 2006.
NimbleGen ChIP 2.1M WG-T (2.1M Drosophila melanogaster - Whole Genome Tiling Set)
Design_ID = 6725
Native NimbleGen files linked below.
From NimbleGen's website:
* Format: 2.1M
* Source: UCSC
* Build: DM5
* Probe Length: 50-75mer
* Median Probe Spacing: 55bp
* Design Name: D. mel ChIP 2.1M WG-T Arr Del
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| Submission date |
Jun 30, 2010 |
| Last update date |
Jul 28, 2010 |
| Contact name |
Sarah Bray |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Cambridge
|
| Department |
PDN
|
| Street address |
Downing Street
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 3DY |
| Country |
United Kingdom |
| |
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| Samples (28)
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GSM561899, GSM561900, GSM561901, GSM993604, GSM993605, GSM993609
GSM993615, GSM1199836, GSM1199837, GSM1199838, GSM1199839, GSM1199840, GSM1199841, GSM1293719, GSM1293720, GSM1293721, GSM1293722, GSM1293723, GSM1293724, GSM1293725, GSM1293726, GSM1293727, GSM1293728, GSM1293729, GSM1293730, GSM1331895, GSM1331896, GSM1331897
|
| Series (7)
|
| GSE22650 |
ChIP-chip from DmD8 cells with Twist antibodies after 30 minutes Notch activation |
| GSE40418 |
p53 prevents neurodegeneration by regulating synaptic genes |
| GSE49478 |
Identifying targets of DSX with DamID-chip |
| GSE49480 |
Identifying targets of DSX with ChIP-seq, DamID-seq and DamID-chip and transcriptional response to DSX isoform switch |
| GSE53446 |
Profiling of Islet, Lim3, Hb9 and Eve genomic binding in Drosophila with DamID |
| GSE53447 |
Profiling of Lola-N genomic binding in Drosophila with DamID |
| GSE55226 |
Profiling of Esg genomic binding in the Drosophila midgut with DamID |
|
| Data table header descriptions |
| ID |
ID of oligo |
| SEQUENCE |
Sequence of the probe |
| CHROMOSOME |
Chromosomal location |
| RANGE_GB |
CHROMOSOME accession.version |
| SPOT_ID |
|
| GENOME_RELEASE |
Genome release for coordinates (BDGP Release 5, April 2006) |
| RANGE_START |
Start position of oligo realtive to the RANGE_GB accession |
| LENGTH |
Length of oligo |
| RANGE_END |
End position of oligo realtive to the RANGE_GB accession |
| Data table |
| ID |
SEQUENCE |
CHROMOSOME |
RANGE_GB |
SPOT_ID |
GENOME_RELEASE |
RANGE_START |
LENGTH |
RANGE_END |
| CHR03RFS021830781 |
ATTTATTTTCATTTCTTTATGACTTTAAGAAGTGAGCAGCAGCCATCTCTATAGCCGAAA |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
21830781 |
60 |
21830841 |
| CHRUFS006027452 |
GCTGATAAGGATTGCTTCCCGTCTGGTATATTCCAGCTACTTCATACT |
chrU |
FA000001.1 |
|
BDGP_Release5 |
6027452 |
48 |
6027500 |
| CHR04FS000434394 |
TTCCGGGCTTGTTACTTAAGACTAGCAGAAGTTTTATCCTAATAGTACTAGAAA |
chr4 |
AE014135.3 |
|
BDGP_Release5 |
434394 |
54 |
434448 |
| CHR03RFS023271505 |
CAGTGGAATTCACATAAAAATGGTAGAGGATTGCTGATTGCTTTACTTGTCTCTAAAGG |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
23271505 |
59 |
23271564 |
| CHR03RFS017605062 |
TCATTCTAACGACAAACGTGGCGGAAGTGAACAATATAATTACAACTAAAAATAG |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
17605062 |
55 |
17605117 |
| CHRXFS018153254 |
TTCACAACCCATTCTGCCCAACGGACTGATCCTAGCATCTGCATT |
chrX |
AE014298.4 |
|
BDGP_Release5 |
18153254 |
45 |
18153299 |
| CHR03RFS023605289 |
TGGCTGACGACAATGGCTGGGTTAAGATACTGCGTATGAGCCAGC |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
23605289 |
45 |
23605334 |
| CHR03RFS015189080 |
AACAAGTCCAAGCAAAAGCCCGGCGCTCGCTGATTCCGCCACACC |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
15189080 |
45 |
15189125 |
| CHR03RFS024141372 |
AATACGTTTGTATACATCTAATTGCACTGCCTGCGTGTGTCTGTGTGTATCTTTGTG |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
24141372 |
57 |
24141429 |
| CHRUFS005467774 |
CAGACTTCTTGAGTTAGCGCTAGACTCTAACATCTAATATTAACCAGACTGCAAATATACT |
chrU |
FA000001.1 |
|
BDGP_Release5 |
5467774 |
61 |
5467835 |
| CHR03RFS019365130 |
ACAGTTTTTGTTGCATACTTACAGCCTGCAAATGGTATCTTTATAGTGTTGTGTGGTCTG |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
19365130 |
60 |
19365190 |
| CHRXFS002444379 |
AATAAATACTTATGTATGTTTATTTATGAAATGAATTTTGGTAAATATTCGCGATA |
chrX |
AE014298.4 |
|
BDGP_Release5 |
2444379 |
56 |
2444435 |
| CHRXFS009345175 |
CACTTTTGTCTCGGCTAGATATTTAAAGACTTAAATTTTTACGTCTCTGATTGCAGA |
chrX |
AE014298.4 |
|
BDGP_Release5 |
9345175 |
57 |
9345232 |
| CHR03RFS017534172 |
AATTATCGTTGTTGCCGCGGCGATCGCCAAGATCACCAATGAAAG |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
17534172 |
45 |
17534217 |
| CHRXFS011319511 |
AAAAAAAATTGTGCGGCAATGGACGAGGCGACGGCTTCAGCCACG |
chrX |
AE014298.4 |
|
BDGP_Release5 |
11319511 |
45 |
11319556 |
| CHRXFS018144558 |
AAACGCATCCACTTGATTTACATACGAGCGGGAATGGCAACGGCA |
chrX |
AE014298.4 |
|
BDGP_Release5 |
18144558 |
45 |
18144603 |
| CHRXFS001168425 |
GTCGAGGTGGATAATTTAGGGTTCAGTGTCTCACCTGCTGGAAAAT |
chrX |
AE014298.4 |
|
BDGP_Release5 |
1168425 |
46 |
1168471 |
| CHR03RHETFS000824344 |
GTTGGACTGTTTCCAGTTGGCTTCTTTTAGTTTAAAAAGGGTCTGTTGAAT |
chr3RHET |
|
chr3RHET |
BDGP_Release5 |
824344 |
51 |
824395 |
| CHRUFS001318365 |
GTGCTCGGTCCGCTACATTCGGAGTCGTTAGACTCTAACCGAACT |
chrU |
FA000001.1 |
|
BDGP_Release5 |
1318365 |
45 |
1318410 |
| CHR03RFS020458091 |
CACCGTTTTTGCGTTGAGCACAATGCTGTCCTCGGTGCAGATATA |
chr3R |
AE014297.2 |
|
BDGP_Release5 |
20458091 |
45 |
20458136 |
Total number of rows: 2157868
Table truncated, full table size 256552 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL10639_DM_5_Catalog_tiling_HX1.gff.gz |
611.0 Kb |
(ftp)(http) |
GFF |
| GPL10639_DM_5_Catalog_tiling_HX1.ncd.gz |
269 b |
(ftp)(http) |
NCD |
| GPL10639_DM_5_Catalog_tiling_HX1.ndf.gz |
114.3 Mb |
(ftp)(http) |
NDF |
| GPL10639_DM_5_Catalog_tiling_HX1.pos.gz |
15.8 Mb |
(ftp)(http) |
POS |
| GPL10639_DM_5_Catalog_tiling_HX1_probe_locations.gff.gz |
13.0 Mb |
(ftp)(http) |
GFF |
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