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Status
Public on Jan 01, 2011
Title
NimbleGen Trichoderma reesei Whole Genome array v 1.0 [090708_Tres_MS_exp]
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Trichoderma reesei Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen custom expression design for Trichoderma reesei (+4 additional control transcripts). Picked 7 probes per gene for 9127 out of 9147 transcripts (9126 exemplars, 10 transcripts with less than 7 probes). Total of 63836 probes.http://genome.jgi-psf.org/Trire2/Trire2.home.html )
Submission date
Jul 02, 2010
Last update date
Feb 22, 2016
Contact name
Monika Schmoll
E-mail(s)
[email protected] Organization name
University of Vienna
Department
Centre of Microbiology and Environmental Systems Science
Lab
Division of Terrestrial Ecosystem Research
Street address
Djerassiplatz 1
City
Vienna
ZIP/Postal code
1030
Country
Austria
Samples (129)
GSM562302 , GSM562303 , GSM562304 , GSM562305 , GSM629143 , GSM629144
GSM629145 ,
GSM629146 ,
GSM678796 ,
GSM678797 ,
GSM678798 ,
GSM678799 ,
GSM683732 ,
GSM683733 ,
GSM683734 ,
GSM683735 ,
GSM683736 ,
GSM683737 ,
GSM683738 ,
GSM683739 ,
GSM683740 ,
GSM683741 ,
GSM683742 ,
GSM683743 ,
GSM683744 ,
GSM683745 ,
GSM683746 ,
GSM683747 ,
GSM893942 ,
GSM893943 ,
GSM893944 ,
GSM893945 ,
GSM893946 ,
GSM893947 ,
GSM893948 ,
GSM893949 ,
GSM893950 ,
GSM893951 ,
GSM893952 ,
GSM893953 ,
GSM956259 ,
GSM956260 ,
GSM956261 ,
GSM956262 ,
GSM956263 ,
GSM956264 ,
GSM956265 ,
GSM956266 ,
GSM956267 ,
GSM956268 ,
GSM956269 ,
GSM956270 ,
GSM956271 ,
GSM956272 ,
GSM956273 ,
GSM956274 ,
GSM956275 ,
GSM956276 ,
GSM956277 ,
GSM956278 ,
GSM956279 ,
GSM956280 ,
GSM956281 ,
GSM956282 ,
GSM959619 ,
GSM959620 ,
GSM959621 ,
GSM959622 ,
GSM959623 ,
GSM959624 ,
GSM1125138 ,
GSM1125139 ,
GSM1125140 ,
GSM1302440 ,
GSM1302441 ,
GSM1302442 ,
GSM1302443 ,
GSM1302444 ,
GSM1302445 ,
GSM1302446 ,
GSM1302447 ,
GSM1708108 ,
GSM1708109 ,
GSM1708110 ,
GSM1708111 ,
GSM2151196 ,
GSM2151197 ,
GSM2151198 ,
GSM2151199 ,
GSM2151200 ,
GSM2151201 ,
GSM2151202 ,
GSM2151203 ,
GSM2151204 ,
GSM2151205 ,
GSM2151206 ,
GSM2151207 ,
GSM2151208 ,
GSM2151209 ,
GSM2151210 ,
GSM2151211 ,
GSM2151212 ,
GSM2151213 ,
GSM2151214 ,
GSM2151215 ,
GSM2358845 ,
GSM2358846 ,
GSM2358847 ,
GSM2358848 ,
GSM2358849 ,
GSM2358850 ,
GSM2358855 ,
GSM2358856 ,
GSM2358857 ,
GSM2358858 ,
GSM2358859 ,
GSM2358860 ,
GSM2644040 ,
GSM2644041 ,
GSM2644042 ,
GSM2644043 ,
GSM2644044 ,
GSM2644045 ,
GSM2644046 ,
GSM2644047 ,
GSM3777021 ,
GSM3777022 ,
GSM3777023 ,
GSM3777024 Series (14)
GSE22687 Effect of LAE1 gene deletion on gene expression in Trichoderma
GSE27471 Transcriptome during shift of Trichoderma reesei from mycelial growth to asexual sporulation
GSE27581 Expression analysis of Trichoderma reesei QM9414 and delta-phlp1, delta-gnb1 and delta-gng1 in light and darkness.
GSE36448 Expression analysis of Trichoderma reesei QM9414 and delta-blr1, delta-blr2 and delta-env1 in light and darkness
GSE39111 Expression analysis of Hypocrea jecorina CBS999.97(MAT1-2) wild-type and delta-env1 strains in four different light and darkness conditions
GSE39276 Systemic analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction
GSE46155 Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose
GSE53874 Transcriptome analysis of deletion of adenylate cyclase in T. reesei upon growth on cellulose in light and darkness
GSE69745 Analysis of wheat straw grown Trichoderma reesei gene expression as influenced by L-methionine in the medium
GSE81365 Transcriptome analysis of T. reesei upon growth on different carbon sources in light and darkness
GSE89103 Transcriptome analysis of T. reesei CBS999.97, backcrossed female fertile strains in QM6a genetic background and QM6a upon growth on cellulose
GSE89104 Transcriptome analysis of T. reesei CBS999.97, backcrossed female fertile strains in QM6a genetic background and QM6a upon mating
GSE99441 Transcriptome analysis of deletion of cre1 in T. reesei upon growth on cellulose in light and darkness
GSE131419 Transcriptome analysis of deletion of protein kinase A, catalytic subunit 1 in T. reesei upon growth on cellulose in light and darkness
Relations Alternative to
GPL18385
Data table header descriptions ID SEQ_ID
IMAGE_ID PROBE_PAIRS FILTERED_PROBE_PAIRS GENE_EXPR_OPTION GENE_INFO SEQUENCER DOE JGI
PROTEIN_ID protein ID in the T. reesei genome database (http://genome.jgi-psf.org/cgi-bin/searchGM?db=Trire2)
GENE_ID gene identification number
SPOT_ID
Data table ID IMAGE_ID PROBE_PAIRS FILTERED_PROBE_PAIRS GENE_EXPR_OPTION GENE_INFO SEQUENCER PROTEIN_ID GENE_ID SPOT_ID ADDLSEQ_MAT111
41639502_532
7
7
BLOCK1
ADDLSEQ|UNK|MAT111|UNK
ADDLSEQ
MAT111
UNK
ProteinID_MAT111
ADDLSEQ_MAT112
41639502_532
7
7
BLOCK1
ADDLSEQ|UNK|MAT112|UNK
ADDLSEQ
MAT112
UNK
ProteinID_MAT112
ADDLSEQ_MAT113
41639502_532
7
7
BLOCK1
ADDLSEQ|UNK|MAT113|UNK
ADDLSEQ
MAT113
UNK
ProteinID_MAT113
ADDLSEQ_TR_37515_RID1
41639502_532
7
7
BLOCK1
ADDLSEQ|Trire2|37515|RID1
ADDLSEQ
37515
RID1
ProteinID_37515
TRIRE2_102377
41639502_532
7
7
BLOCK1
jgi|Trire2|102377|fgenesh5_pg.C_scaffold_1000010
jgi
102377
fgenesh5_pg.C_scaffold_1000010
ProteinID_102377
TRIRE2_102378
41639502_532
7
7
BLOCK1
jgi|Trire2|102378|fgenesh5_pg.C_scaffold_1000011
jgi
102378
fgenesh5_pg.C_scaffold_1000011
ProteinID_102378
TRIRE2_102379
41639502_532
7
7
BLOCK1
jgi|Trire2|102379|fgenesh5_pg.C_scaffold_1000012
jgi
102379
fgenesh5_pg.C_scaffold_1000012
ProteinID_102379
TRIRE2_102381
41639502_532
7
7
BLOCK1
jgi|Trire2|102381|fgenesh5_pg.C_scaffold_1000014
jgi
102381
fgenesh5_pg.C_scaffold_1000014
ProteinID_102381
TRIRE2_102382
41639502_532
7
7
BLOCK1
jgi|Trire2|102382|fgenesh5_pg.C_scaffold_1000015
jgi
102382
fgenesh5_pg.C_scaffold_1000015
ProteinID_102382
TRIRE2_102383
41639502_532
7
7
BLOCK1
jgi|Trire2|102383|fgenesh5_pg.C_scaffold_1000016
jgi
102383
fgenesh5_pg.C_scaffold_1000016
ProteinID_102383
TRIRE2_102385
41639502_532
7
7
BLOCK1
jgi|Trire2|102385|fgenesh5_pg.C_scaffold_1000018
jgi
102385
fgenesh5_pg.C_scaffold_1000018
ProteinID_102385
TRIRE2_102386
41639502_532
7
7
BLOCK1
jgi|Trire2|102386|fgenesh5_pg.C_scaffold_1000019
jgi
102386
fgenesh5_pg.C_scaffold_1000019
ProteinID_102386
TRIRE2_102401
41639502_532
7
7
BLOCK1
jgi|Trire2|102401|fgenesh5_pg.C_scaffold_1000034
jgi
102401
fgenesh5_pg.C_scaffold_1000034
ProteinID_102401
TRIRE2_102403
41639502_532
7
7
BLOCK1
jgi|Trire2|102403|fgenesh5_pg.C_scaffold_1000036
jgi
102403
fgenesh5_pg.C_scaffold_1000036
ProteinID_102403
TRIRE2_102411
41639502_532
7
7
BLOCK1
jgi|Trire2|102411|fgenesh5_pg.C_scaffold_1000044
jgi
102411
fgenesh5_pg.C_scaffold_1000044
ProteinID_102411
TRIRE2_102414
41639502_532
7
7
BLOCK1
jgi|Trire2|102414|fgenesh5_pg.C_scaffold_1000047
jgi
102414
fgenesh5_pg.C_scaffold_1000047
ProteinID_102414
TRIRE2_102416
41639502_532
7
7
BLOCK1
jgi|Trire2|102416|fgenesh5_pg.C_scaffold_1000049
jgi
102416
fgenesh5_pg.C_scaffold_1000049
ProteinID_102416
TRIRE2_102437
41639502_532
7
7
BLOCK1
jgi|Trire2|102437|fgenesh5_pg.C_scaffold_1000070
jgi
102437
fgenesh5_pg.C_scaffold_1000070
ProteinID_102437
TRIRE2_102441
41639502_532
7
7
BLOCK1
jgi|Trire2|102441|fgenesh5_pg.C_scaffold_1000074
jgi
102441
fgenesh5_pg.C_scaffold_1000074
ProteinID_102441
TRIRE2_102444
41639502_532
7
7
BLOCK1
jgi|Trire2|102444|fgenesh5_pg.C_scaffold_1000077
jgi
102444
fgenesh5_pg.C_scaffold_1000077
ProteinID_102444
9126 1157 Kbytes .Supplementary file Size Download File type/resource GPL10642_090708_Tres_MS_exp.ndf.gz
4.1 Mb
(ftp) (http) NDF
GPL10642_090708_Tres_MS_exp.ngd.gz
95.1 Kb
(ftp) (http) NGD
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