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Status
Public on Apr 01, 2011
Title
Agilent-020097 E. coli Gene Expression Microarray (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organisms
Escherichia coli O157:H7 str. EDL933 ; Escherichia coli CFT073 ; Escherichia coli O157:H7 str. Sakai ; Escherichia coli str. K-12 substr. MG1655 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
E. coli (K12-MG1655, CFT073, O157-H7 EDL933, O157-H7 VT2-Sakai) Oligo Microarray
Submission date
Apr 01, 2011
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (174)
GSM796442 , GSM796443 , GSM796444 , GSM796445 , GSM936392 , GSM936393
GSM936394 ,
GSM936395 ,
GSM936396 ,
GSM936397 ,
GSM936398 ,
GSM936399 ,
GSM996485 ,
GSM996486 ,
GSM996487 ,
GSM996488 ,
GSM996489 ,
GSM996490 ,
GSM996491 ,
GSM996492 ,
GSM996493 ,
GSM996494 ,
GSM996495 ,
GSM996496 ,
GSM996497 ,
GSM996498 ,
GSM996499 ,
GSM996500 ,
GSM996501 ,
GSM996502 ,
GSM1035349 ,
GSM1035350 ,
GSM1035351 ,
GSM1035352 ,
GSM1035353 ,
GSM1035354 ,
GSM1035355 ,
GSM1035356 ,
GSM1035357 ,
GSM1035358 ,
GSM1035359 ,
GSM1035360 ,
GSM1035361 ,
GSM1035362 ,
GSM1035363 ,
GSM1035364 ,
GSM1035365 ,
GSM1035366 ,
GSM1035367 ,
GSM1035368 ,
GSM1035369 ,
GSM1035370 ,
GSM1035371 ,
GSM1035372 ,
GSM1035373 ,
GSM1035374 ,
GSM1035375 ,
GSM1087810 ,
GSM1087811 ,
GSM1087812 ,
GSM1087813 ,
GSM1087814 ,
GSM1087815 ,
GSM1087816 ,
GSM1087817 ,
GSM1087818 ,
GSM1087819 ,
GSM1087820 ,
GSM1087821 ,
GSM1087822 ,
GSM1087823 ,
GSM1087824 ,
GSM1087825 ,
GSM1087826 ,
GSM1087827 ,
GSM1087828 ,
GSM1087829 ,
GSM1087830 ,
GSM1087831 ,
GSM1087832 ,
GSM1087833 ,
GSM1087834 ,
GSM1087835 ,
GSM1087836 ,
GSM1087837 ,
GSM1087838 ,
GSM1087839 ,
GSM1087840 ,
GSM1087841 ,
GSM1087842 ,
GSM1087843 ,
GSM1087844 ,
GSM1087845 ,
GSM1087846 ,
GSM1087847 ,
GSM1317878 ,
GSM1317879 ,
GSM1317880 ,
GSM1317881 ,
GSM1317882 ,
GSM1317883 ,
GSM1370028 ,
GSM1370029 ,
GSM1370030 ,
GSM1370031 ,
GSM1370032 ,
GSM1370033 ,
GSM1370034 ,
GSM1370035 ,
GSM1635618 ,
GSM1635619 ,
GSM1635620 ,
GSM1635621 ,
GSM1635622 ,
GSM1635623 ,
GSM1635624 ,
GSM1635625 ,
GSM1635626 ,
GSM1635627 ,
GSM1635628 ,
GSM1635629 ,
GSM1696303 ,
GSM1696304 ,
GSM1696305 ,
GSM1696306 ,
GSM1696307 ,
GSM1696308 ,
GSM1696309 ,
GSM1696310 ,
GSM1696311 ,
GSM1901137 ,
GSM1901138 ,
GSM1901139 ,
GSM1901140 ,
GSM1901141 ,
GSM1901142 ,
GSM1901143 ,
GSM1901144 ,
GSM1901145 ,
GSM1901146 ,
GSM2284709 ,
GSM2284710 ,
GSM2284711 ,
GSM2284712 ,
GSM2284713 ,
GSM2284714 ,
GSM2284715 ,
GSM2284716 ,
GSM2284717 ,
GSM2284718 ,
GSM2284719 ,
GSM2284720 ,
GSM2300525 ,
GSM2300526 ,
GSM2300527 ,
GSM2300528 ,
GSM2300529 ,
GSM2300530 ,
GSM2300531 ,
GSM2300532 ,
GSM2473477 ,
GSM2473478 ,
GSM2473479 ,
GSM2473480 ,
GSM2473481 ,
GSM2473482 ,
GSM2473483 ,
GSM2473484 ,
GSM2734727 ,
GSM2734728 ,
GSM2735164 ,
GSM2735165 ,
GSM2735166 ,
GSM2735167 Series (16)
GSE32131 Escherichia coli K-12: 5% isooctane treatment at four time points
GSE38185 Escherichia coli K-12: 1% hydrogen peroxide treatment under anaerobic condition
GSE38186 Escherichia coli K-12: 0%, 10% and 30% hydrogen peroxide (H2O2) treatments, in wild type and luxS mutants
GSE40557 Transcriptional analysis of E. coli whole genome during heat inactivation processes related to industrial cooking
GSE42205 Polyphenols from olive mill waste affect biofilm formation and motility in Escherichia coli K12
GSE44614 Comparative transcriptomics of Escherichia coli growing in complex environments
GSE54512 Effect of NaCl concentration on the transcriptional network of E. coli in glucose minimal medium with glycine betaine
GSE56833 Expression profiling of EvgSc and ompR mutants
GSE66995 Expression profiling of E. coli expressing the heterologous sigma70 factor (rpoD) of Lactobacillus plantarum
GSE69265 Transcriptomic analysis of glycolaldehyde-treated wild type cells and a synthetic strain
GSE73707 Escherichia coli: untreated versus 5-azacytidine-treated expression profiles
GSE85807 Transcriptomic changes of Escherichia coli expressing BnTR1 at normal and heat stress conditions
GSE86341 LLQR E. coli ATCC 25922 vs wild-type E. coli ATCC 25922
GSE94342 Insights on Osmotic Tolerance Mechanisms in Escherichia coli Gained from an rpoC Mutation
GSE102322 E. coli BW25113 azide treated vs untreated cells
GSE102347 Expression data in Esherichia coli wild type and ∆dnaK
Relations Alternative to
GPL13359
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
LOCUSLINK_ID LocuslinkID
ORF Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE LOCUSLINK_ID ORF GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION GO_ID SEQUENCE 1
96
164
GE_BrightCorner
--GE_BrightCorner
pos
2
96
162
DarkCorner
--DarkCorner
pos
3
96
160
DarkCorner
--DarkCorner
pos
4
96
158
(-)3xSLv1
--(-)3xSLv1
neg
5
96
156
A_07_P030071
cmr|c_2962|asap|ABR-0079106
FALSE
cmr|c_2962|asap|ABR-0079106
unmapped
Putative PTS system IIBC component yfeV [c_2962]
GTTTATCTGGCGTTAATGGACAGCCAGGGATTCAACAGCTTATTTCCCATCCTTTCAATG
6
96
154
(-)3xSLv1
--(-)3xSLv1
neg
7
96
152
(-)3xSLv1
--(-)3xSLv1
neg
8
96
150
A_07_P046244
FALSE
961226
Z4877 putative phosphotransferase system enzyme subunit
cmr|Z4877|asap|ABH-0028530
unmapped
putative phosphotransferase system enzyme subunit [Z4877]
ATTGCTACCAAAATCGCGCCGTTTATTACCGGAATGGCGAAAGACGTTAACTTCAAATTT
9
96
148
A_07_P010256
FALSE
944756
mokC regulatory protein for HokC, overlaps CDS of hokC
cmr|b0018|asap|ABE-0047278|asap|ABE-0000064
chr:16829-16770
Gef protein interferes with membrane function when in excess [b0018]
GAGAAAAGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTTGCTGTTTTCAC
10
96
146
A_07_P007924
FALSE
946425
proB gamma-glutamate kinase
cmr|b0242|asap|ABE-0000830
chr:259989-260048
gamma-glutamate kinase [b0242]
GO:0005737(cytoplasm)|GO:0006561(proline biosynthetic process)
TAACAATATCGTTCCGGTAATCAATGAGAACGATGCTGTCGCTACGGCAGAGATTAAGGT
11
96
144
A_07_P033036
cmr|c_3566|asap|ABR-0079729
FALSE
cmr|c_3566|asap|ABR-0079729
unmapped
Hypothetical protein [c_3566]
TGGATTCTGCTGATTAATGCCACGATCTATCTTACTCTGGGAATTTGTAGCGGACGTTTC
12
96
142
A_07_P062362
FALSE
912642
ECs1250 C4-type zinc finger protein (TraR family)
cmr|ECs1250|asap|ACA-0131178
unmapped
C4-type zinc finger protein [ECs1250]
AATCTCTCCCTGCAAAAATACAAATCCGATAGTAATGCCCCATCTGCTACTCATTGTTGC
13
96
140
(-)3xSLv1
--(-)3xSLv1
neg
14
96
138
A_07_P043700
FALSE
957235
yahI putative carbamate kinase
cmr|Z0412|asap|ABH-0024301
unmapped
putative kinase [Z0412]
GTGAAAGCCAGCGTGACGAATTACAAAAGGCAAACCCTGACTGGCGTTTTGTTGAAGATG
15
96
136
A_07_P058326
FALSE
912946
ECs1795 putative portal protein
cmr|ECs1795|cmr|ECs2248|cmr|ECs1975|asap|ACA-0131753
unmapped
putative portal protein [ECs1795]
CACTGCAACAGTATGACCGAAGATAAACCCGGAGAAGCTCATTCATCAGCCTGGACCCTG
16
96
134
A_07_P049983
FALSE
960386
Z5294 hypothetical protein
cmr|Z5294|asap|ABH-0028920
unmapped
orf Unknown function [Z5294]
CAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTCGGAACGGACTTTC
17
96
132
A_07_P054674
cmr|ECs2229
FALSE
cmr|ECs2229
unmapped
hypothetical protein [ECs2229]
AAATATCACAATGTAAGTTTTCTGTTAATACGGAGAGCCTTCAGTGTCCATCCGAGGCGG
18
96
130
A_07_P038465
cmr|c_1548|asap|ABR-0077658
FALSE
cmr|c_1548|asap|ABR-0077658
unmapped
Putative Regulatory protein CII of bacteriophage [c_1548]
ACATCAGTCCGATTAGCAGGGCTTTTAAGTATGCGCTTGATGGACTCACCAATAAAAAAC
19
96
128
A_07_P020729
FALSE
946151
hdhA 7-alpha-hydroxysteroid dehydrogenase, NAD-dependent
cmr|b1619|asap|ABE-0005419
chr:1695470-1695411
NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids [b1619]
GO:0005737(cytoplasm)
TCCGTTATTACACCAGAAATTGAACAAAAAATGTTACAGCACACGCCGATCAGACGTCTG
20
96
126
A_07_P031938
cmr|c_2526|cmr|c_4570|asap|ABR-0078659|asap|ABR-0080753
FALSE
cmr|c_2526|cmr|c_4570|asap|ABR-0078659|asap|ABR-0080753
unmapped
Hypothetical protein yafZ [c_2526]
TTATTCTGCTCAACTCCCATGACGGTTCATCCAGCTACCAGATGTTACCCGGATATTTTC
15744 2848 Kbytes .Supplementary data files not provided
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