GEO help: Mouse over screen elements for information.
Status
Public on May 10, 2013
Title
NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array [100718_HG18_CpG_Refseq_Prom_MeDIP]
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Roche NimbleGen
Manufacture protocol
see manufacturer's web site www.nimblegen.com
Description
Build: Hg18, NCBI 36
Submission date
May 10, 2013
Last update date
Mar 15, 2016
Organization
NimbleGen Systems, Inc.
E-mail(s)
[email protected] Phone
608-218-7600
URL
http://www.nimblegen.com/ Street address
504 S. Rosa Road
City
Madison
State/province
WI
ZIP/Postal code
53719
Country
USA
Samples (253)
GSM1142978 , GSM1142979 , GSM1142980 , GSM1142981 , GSM1142982 , GSM1142983
GSM1142984 ,
GSM1142985 ,
GSM1142986 ,
GSM1142987 ,
GSM1142988 ,
GSM1142989 ,
GSM1142990 ,
GSM1142991 ,
GSM1142992 ,
GSM1142993 ,
GSM1142994 ,
GSM1142995 ,
GSM1142996 ,
GSM1142997 ,
GSM1142998 ,
GSM1142999 ,
GSM1143000 ,
GSM1143001 ,
GSM1143002 ,
GSM1143003 ,
GSM1143004 ,
GSM1246750 ,
GSM1246751 ,
GSM1246752 ,
GSM1246753 ,
GSM1246754 ,
GSM1246755 ,
GSM1246756 ,
GSM1246757 ,
GSM1246758 ,
GSM1246759 ,
GSM1246760 ,
GSM1246761 ,
GSM1246762 ,
GSM1246763 ,
GSM1246764 ,
GSM1246765 ,
GSM1246766 ,
GSM1246767 ,
GSM1246768 ,
GSM1246769 ,
GSM1246770 ,
GSM1246771 ,
GSM1246772 ,
GSM1246773 ,
GSM1246774 ,
GSM1246775 ,
GSM1246776 ,
GSM1246777 ,
GSM1246778 ,
GSM1246779 ,
GSM1246780 ,
GSM1246781 ,
GSM1246782 ,
GSM1246783 ,
GSM1246784 ,
GSM1246785 ,
GSM1246786 ,
GSM1246787 ,
GSM1246788 ,
GSM1246789 ,
GSM1246790 ,
GSM1246791 ,
GSM1246792 ,
GSM1246793 ,
GSM1246794 ,
GSM1246795 ,
GSM1246796 ,
GSM1246797 ,
GSM1246798 ,
GSM1246799 ,
GSM1246800 ,
GSM1246801 ,
GSM1246802 ,
GSM1246803 ,
GSM1246804 ,
GSM1246805 ,
GSM1296267 ,
GSM1296268 ,
GSM1296269 ,
GSM1296270 ,
GSM1296271 ,
GSM1296272 ,
GSM1296273 ,
GSM1296274 ,
GSM1296275 ,
GSM1398935 ,
GSM1398936 ,
GSM1398937 ,
GSM1398938 ,
GSM1398939 ,
GSM1398940 ,
GSM1398941 ,
GSM1398942 ,
GSM1405160 ,
GSM1405161 ,
GSM1405162 ,
GSM1405163 ,
GSM1405164 ,
GSM1405165 ,
GSM1405166 ,
GSM1405167 ,
GSM1405168 ,
GSM1405169 ,
GSM1405170 ,
GSM1405171 ,
GSM1405172 ,
GSM1405173 ,
GSM1405174 ,
GSM1405175 ,
GSM1405176 ,
GSM1405177 ,
GSM1405178 ,
GSM1405179 ,
GSM1405180 ,
GSM1405181 ,
GSM1405182 ,
GSM1405183 ,
GSM1405184 ,
GSM1405185 ,
GSM1405186 ,
GSM1405187 ,
GSM1405188 ,
GSM1405189 ,
GSM1405190 ,
GSM1405191 ,
GSM1405192 ,
GSM1405193 ,
GSM1405194 ,
GSM1405195 ,
GSM1405196 ,
GSM1405197 ,
GSM1405198 ,
GSM1405199 ,
GSM1405200 ,
GSM1405201 ,
GSM1405202 ,
GSM1405203 ,
GSM1405204 ,
GSM1405205 ,
GSM1405206 ,
GSM1405207 ,
GSM1405208 ,
GSM1405209 ,
GSM1405210 ,
GSM1405211 ,
GSM1405212 ,
GSM1405213 ,
GSM1405214 ,
GSM1405215 ,
GSM1405216 ,
GSM1405217 ,
GSM1405218 ,
GSM1405219 ,
GSM1405220 ,
GSM1405221 ,
GSM1405222 ,
GSM1405223 ,
GSM1405224 ,
GSM1405225 ,
GSM1405226 ,
GSM1405227 ,
GSM1405228 ,
GSM1405229 ,
GSM1405230 ,
GSM1405231 ,
GSM1405232 ,
GSM1405233 ,
GSM1405234 ,
GSM1405235 ,
GSM1405236 ,
GSM1405237 ,
GSM1405238 ,
GSM1405239 ,
GSM1405240 ,
GSM1405241 ,
GSM1405242 ,
GSM1405243 ,
GSM1405244 ,
GSM1405245 ,
GSM1405246 ,
GSM1405247 ,
GSM1405248 ,
GSM1405249 ,
GSM1405250 ,
GSM1405251 ,
GSM1405252 ,
GSM1405253 ,
GSM1405254 ,
GSM1405255 ,
GSM1405256 ,
GSM1405257 ,
GSM1405258 ,
GSM1405259 ,
GSM1405260 ,
GSM1405261 ,
GSM1515865 ,
GSM1515866 ,
GSM1515867 ,
GSM1515868 ,
GSM1515869 ,
GSM1515870 ,
GSM1515871 ,
GSM1515872 ,
GSM2054086 ,
GSM2054087 ,
GSM2054088 ,
GSM2054089 ,
GSM2054090 ,
GSM2054091 ,
GSM2054092 ,
GSM2054093 ,
GSM2054094 ,
GSM2054095 ,
GSM2054096 ,
GSM2054097 ,
GSM2054098 ,
GSM2054099 ,
GSM2054100 ,
GSM2054101 ,
GSM2054102 ,
GSM2054103 ,
GSM2054104 ,
GSM2054105 ,
GSM2054106 ,
GSM2054107 ,
GSM2054108 ,
GSM2054109 ,
GSM2054110 ,
GSM2054111 ,
GSM2054112 ,
GSM2054113 ,
GSM2054114 ,
GSM2054115 ,
GSM2054116 ,
GSM2054117 ,
GSM2054118 ,
GSM2054119 ,
GSM2054120 ,
GSM2054121 ,
GSM2054122 ,
GSM2054123 ,
GSM2054124 ,
GSM2054125 ,
GSM2327725 ,
GSM2327726 ,
GSM2327727 Series (10)
GSE47017 MeDIP-Chip of PrEC, LnCAP, and PC3 cells treated with vehicle control, sulforaphane, or 3,3’-diindolylmethane
GSE51517 Chip-chip and MIRA-chip from primary skin fibroblasts, derived of matched pairs of early and late donor age
GSE51519 Aging signatures developed from a longitudinal study design are dominated by reduced transcription of genes involved in protein synthesis.
GSE53569 SIRT1 affects DNA methylation of polycomb group protein target genes (PCGTs), a hotspot of the epigenetic shift observed in ageing
GSE57971 MeDIP for ten early passage melanoma cell cultures
GSE58256 Integrative epigenomic analysis of differential DNA methylation in bladder cancer
GSE61862 DNA Methylation Across Monozygotic Twin Pairs and Their Parents
GSE77537 Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse [DNA methylation]
GSE77540 Integrative analysis of DNA copy number, DNA methylation and gene expression in multiple myeloma reveals alterations related to relapse
GSE87319 MeDIP-Chip from deliveries of control fetuses or fetuses with NTDs
Data table header descriptions ID PROBE_ID from .pos file
SEQ_ID CHROMOSOME RANGE_GB CHROMOSOME GenBank Accession number.version
SPOT_ID RANGE_START RANGE_END SEQUENCE
Data table ID SEQ_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START RANGE_END SEQUENCE CHR01FS000018603
chr1:18598-21673
chr1
NC_000001.9 18603
18652
TCTTTGGGACCGCGGTTTATACTTTCGAAGTGCTCGGAGCCCTTCCTCCA
CHR01FS000018717
chr1:18598-21673
chr1
NC_000001.9 18717
18766
GGAACCCAACGCGGTGTCAGAGAAGTGGGGTCCCCTACGAGGGACCAGGA
CHR01FS000018813
chr1:18598-21673
chr1
NC_000001.9 18813
18862
GAACCCGGCAGGGGCGGGAAGACGCAGGAGTGGGGAGGCGGAACCGGGAC
CHR01FS000018901
chr1:18598-21673
chr1
NC_000001.9 18901
18950
CTTCCCTGCTAGGGCCGGGCAAGGCCGGGTGCAGGGCGCGGCTCCAGGGA
CHR01FS000019023
chr1:18598-21673
chr1
NC_000001.9 19023
19072
GGCACCGGGCAGCGGCCGCGGAACACCAGCTTGGCGCAGGCTTCTCGGTC
CHR01FS000019114
chr1:18598-21673
chr1
NC_000001.9 19114
19163
TCCGGGTCCCCTACTTCGCCCCGCCAGGCCCCCACGACCCTACTTCCCGC
CHR01FS000019201
chr1:18598-21673
chr1
NC_000001.9 19201
19250
GGAAGCTCCCGCCGCCGCTTCCGCTCTGCCGGAGCCGCTGGGTCCTAGCC
CHR01FS000019323
chr1:18598-21673
chr1
NC_000001.9 19323
19372
CGCGGCTCCAGGACCCCGTCGACCCGGAGCGCTGTCCTGTCGGGCCGAGT
CHR01FS000019399
chr1:18598-21673
chr1
NC_000001.9 19399
19448
TCACTCCGAGCTCCCGACGTGCACACGGCTCCCATGCGTTGTCTTCCGAG
CHR01FS000019499
chr1:18598-21673
chr1
NC_000001.9 19499
19548
ACCTCCGTCCTTTGTCCCATCGCTGCCTTCCCCTCAAGCTCAGGGCCAAG
CHR01FS000019617
chr1:18598-21673
chr1
NC_000001.9 19617
19666
CCACGCCCAGGGCCCGCCCCTGCCCTCCAGCCCTACGCCTTGACCCGCTT
CHR01FS000019719
chr1:18598-21673
chr1
NC_000001.9 19719
19768
CTTGTGATCTGCTTAGTTCCCACCCCCCTTTAAGAATTCAATAGAGAAGC
CHR01FS000019805
chr1:18598-21673
chr1
NC_000001.9 19805
19855
TTGTGAAGTGCCTAGAATAGTCAAAATTCACAGAGACAGAAGCAGTGGTCG
CHR01FS000019923
chr1:18598-21673
chr1
NC_000001.9 19923
19972
GATGGAAGGGTGCTGGAAATGAGTGGTAGTGATGGCGGCACAACAGTGTG
CHR01FS000019999
chr1:18598-21673
chr1
NC_000001.9 19999
20052
TGCTGAAAAATGGTTTAGACGGTGAATTTTAGGTTATGTATGTTTTACCACAAT
CHR01FS000020118
chr1:18598-21673
chr1
NC_000001.9 20118
20167
ATAAAAAGAGCATCATCAGTCCAAAGTCCAGCAGTTGTCCCTCCTGGAAT
CHR01FS000020200
chr1:18598-21673
chr1
NC_000001.9 20200
20255
GCCTTTTAGGGTTGCCAGATTAAAAGACAGGATGCCCAGCTAGTTTGAATTTTAGA
CHR01FS000020320
chr1:18598-21673
chr1
NC_000001.9 20320
20374
AAAAACATTATTGGTTGTTTATCTGAGATTCAGAATTAAGCATTTTATATTTTAT
CHR01FS000020398
chr1:18598-21673
chr1
NC_000001.9 20398
20447
CTCTTCCTAACACTCTCTCCCTCTCCCAGTTTTGTCCGCCTTCCCTGCCT
CHR01FS000020520
chr1:18598-21673
chr1
NC_000001.9 20520
20577
CCTTACCAGAGGTAAAGAAGAGATGGATCTCCACTCATGTTGTAGACAGAATGTTTAT
711712 91069 Kbytes .Supplementary file Size Download File type/resource GPL17148_100718_HG18_CpG_Refseq_Prom_MeDIP.gff.gz
3.8 Mb
(ftp) (http) GFF
GPL17148_100718_HG18_CpG_Refseq_Prom_MeDIP.ndf.gz
46.7 Mb
(ftp) (http) NDF
GPL17148_100718_HG18_CpG_Refseq_Prom_MeDIP.pos.gz
6.5 Mb
(ftp) (http) POS
GPL17148_100718_HG18_CpG_Refseq_Prom_MeDIP_HX3.ncd.gz
283 b
(ftp) (http) NCD
GPL17148_100718_HG18_CpG_Refseq_Prom_MeDIP_probe_locations.gff.gz
4.9 Mb
(ftp) (http) GFF
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