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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 06, 2014 |
| Title |
[RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version] [CDF: Brainarray ENTREZG Version 14] |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Rattus norvegicus |
| Manufacturer |
Affymetrix |
| Manufacture protocol |
This is identical to GPL6247 but a custom CDF environment was used to extract data [Brainarray Version 14, RaGene10stv1_Rn_ENTREZG].
CDF and other files can be downloaded at:
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v14
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| Description |
[RaGene10stv1_Rn_ENTREZG_V14] Affymetrix GeneChip RaGene10stv1 Array [Brainarray Entrez Version 14]
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| Submission date |
Nov 06, 2013 |
| Last update date |
Feb 06, 2014 |
| Contact name |
Carsten Sticht |
| Organization name |
University Heidelberg
|
| Department |
ZMF
|
| Street address |
Theodor-Kutzer-Ufer
|
| City |
Mannheim |
| ZIP/Postal code |
68169 |
| Country |
Germany |
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| Samples (34)
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GSM1260254, GSM1260255, GSM1260256, GSM1260257, GSM1260258, GSM1260259
GSM1260260, GSM1260261, GSM1260262, GSM1260263, GSM1260264, GSM1260265, GSM1260266, GSM1260267, GSM1260268, GSM1260269, GSM1260270, GSM1260271, GSM1260272, GSM1260273, GSM1260274, GSM1260275, GSM1260276, GSM1260277, GSM1494603, GSM1494604, GSM1494605, GSM1494606, GSM1494607, GSM1494608, GSM1494609, GSM1494610, GSM1856275, GSM1856276
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| Series (4)
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| GSE52142 |
Open lung approach with low tidal volume mechanical ventilation attenuates lung injury in rats with massive brain damage |
| GSE60961 |
Alteration of mRNA and microRNA expression profiles in rat muscular type vasculature in early postnatal development [mRNA] |
| GSE60963 |
Alteration of mRNA and microRNA expression profiles in rat muscular type vasculature in early postnatal development |
| GSE72157 |
Expression data from pooled biological replicates (n=6) from MEF2D knockdown in neonatal rat ventricular myocytes (NRVMs) |
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| Relations |
| Alternative to |
GPL6247 (Alternative CDF [official]) |
| Data table header descriptions |
| ID |
|
| GeneSymbol |
Official Genesymbols |
| UniGeneID |
Unigene database ID |
| SPOT_ID |
Entrez GeneID |
| REFSEQID |
|
| GB_ACC |
GenBank Accession number |
| Data table |
| ID |
GeneSymbol |
UniGeneID |
SPOT_ID |
REFSEQID |
GB_ACC |
| 100034253_at |
Gnl3l |
guanine nucleotide binding protein-like |
100034253 |
NM_001081958 /// NP_001075427 |
NM_001081958 |
| 100036765_at |
Ccdc92 |
coiled-coil domain containing 92 |
100036765 |
NM_001083898 /// NP_001077367 |
NM_001083898 |
| 100049583_at |
Trex1 |
three prime repair exonuclease 1 |
100049583 |
NM_001024989 /// NP_001020160 |
NM_001024989 |
| 100124593_at |
Cxcr6 |
chemokine receptor CXCR6 |
100124593 |
NM_001102587 /// NP_001096057 |
NM_001102587 |
| 100125361_at |
LOC100125361 |
zinc finger protein LOC100125361 |
100125361 |
NM_001109677 /// NP_001103147 |
NM_001109677 |
| 100125362_at |
LOC100125362 |
hypothetical protein LOC100125362 |
100125362 |
NM_001103354 /// NP_001096824 |
NM_001103354 |
| 100125364_at |
LOC100125364 |
hypothetical protein LOC100125364 |
100125364 |
NM_001103356 /// NP_001096826 |
NM_001103356 |
| 100125365_at |
LOC100125365 |
hypothetical protein LOC100125365 |
100125365 |
XR_085872 /// XR_086292 |
XR_085872 |
| 100125367_at |
LOC100125367 |
hypothetical protein LOC100125367 |
100125367 |
NM_001103357 /// NP_001096827 |
NM_001103357 |
| 100125368_at |
LOC100125368 |
zinc finger protein LOC100125368 |
100125368 |
NM_001139487 /// NP_001132959 |
NM_001139487 |
| 100125369_at |
Ceacam6 |
carcinoembryonic antigen-related cell ad |
100125369 |
NM_001103358 /// NP_001096828 |
NM_001103358 |
| 100125370_at |
Nadk |
NAD kinase |
100125370 |
NM_001109678 /// NP_001103148 |
NM_001109678 |
| 100125372_at |
LOC100125372 |
carboxylesterase ES-4 |
100125372 |
NM_001103359 /// NP_001096829 |
NM_001103359 |
| 100125373_at |
Pnrc2 |
proline-rich nuclear receptor coactivato |
100125373 |
NM_001103360 /// NP_001096830 |
NM_001103360 |
| 100125374_at |
Adat3 |
"adenosine deaminase, tRNA-specific 3, TA" |
100125374 |
NM_001103361 /// NP_001096831 |
NM_001103361 |
| 100125377_at |
LOC100125377 |
hypothetical LOC100125377 |
100125377 |
XR_085741 /// XR_086157 |
XR_085741 |
| 100125384_at |
LOC100125384 |
hypothetical protein LOC100125384 |
100125384 |
NM_001103363 /// NP_001096833 |
NM_001103363 |
| 100125385_at |
LOC100125385 |
hypothetical protein LOC100125385 |
100125385 |
NM_001103364 /// NP_001096834 |
NM_001103364 |
| 100125386_at |
LOC100125386 |
hypothetical LOC100125386 |
100125386 |
XR_085608 /// XR_086008 |
XR_085608 |
| 100125595_at |
Rs1 |
retinoschisin |
100125595 |
NM_001104643 /// NP_001098113 |
NM_001104643 |
Total number of rows: 19239
Table truncated, full table size 1962 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL17896_RaGene-1_0-st-v1.cdf.gz |
7.8 Mb |
(ftp)(http) |
CDF |
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