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Platform GPL18537

Query DataSets for GPL18537

Status

Public on Sep 09, 2014

Title

Agilent-041017 Embryogene Bovine 45K microarray with drosophila controls v.2.1 [EMBV_Droso_V2.1]

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Embryogene Bovine 45K microarray with drosophila controls

Arrays of this design have barcodes that begin with 16041017 or 2541017.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Apr 07, 2014

Last update date

Sep 11, 2014

Contact name

Eric Fournier

E-mail(s)

[email protected]

Organization name

Universite Laval

Department

Departement des sciences animales

Street address

2325 Rue de l'Universite

City

Quebec

State/province

Quebec

ZIP/Postal code

G1V 0A6

Country

Canada

Samples (4)

GSM1365549, GSM1365550, GSM1365551, GSM1365552

Series (1)

Contrast of poly-ribosomal mRNA in germina vesicle (GV) and metaphase II (MII) bovine oocytes.

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
NAME	NAME
CONTROL_TYPE	Control type
ORF	Gene symbol of the gene targeted by the probe
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
SEQUENCE	Sequence
SPOT_ID	Spot identifier

Data table
ID	COL	ROW	NAME	CONTROL_TYPE	ORF	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SEQUENCE	SPOT_ID
1	266	170	GE_BrightCorner	pos					GE_BrightCorner
2	266	168	DarkCorner	pos					DarkCorner
3	266	166	DarkCorner	pos					DarkCorner
4	266	164	DarkCorner	pos					DarkCorner
5	266	162	DarkCorner	pos					DarkCorner
6	266	160	DarkCorner	pos					DarkCorner
7	266	158	DarkCorner	pos					DarkCorner
8	266	156	DarkCorner	pos					DarkCorner
9	266	154	DarkCorner	pos					DarkCorner
10	266	152	DarkCorner	pos					DarkCorner
11	266	150	DarkCorner	pos					DarkCorner
12	266	148	EMBV3_25212	FALSE	ATP11A		unmapped	CAAGGTGATGCTTTTCTGTCTTTCTGCATGTTTGGGACTTGATCGGAGGACCATGGAGGG	EMBV3_25212
13	266	146	EMBV3_07437	FALSE			unmapped	CTGCTCTGAAATACTTTTGGGAACTGTGGAGCTTCTCCCTGAAGGGTCCAAGGCCTGTCT	EMBV3_07437
14	266	144	EMBV3_09635	FALSE			unmapped	CCTTGCACATCCCTCTCCACACTCTGCACCCAAATGTCCTCTCCTCCACCCCTGACCCCT	EMBV3_09635
15	266	142	EMBV3_32123	FALSE	UBAC2		unmapped	AAGACACTGATTTATATATTGGGACTACAGGCTTCTGGGATCTGCTACAACAGCAGAACG	EMBV3_32123
16	266	140	EMBV3_01256	FALSE	ELMOD3		unmapped	AGTGCTCTTCTGGCTTTCAGAGGAATTTCTTTGTGAGTACAGAAGTCCTCCAAGCCCAAG	EMBV3_01256
17	266	138	EMBV3_38037	FALSE			unmapped	TGGCCTGTAGTTTTCTTTTTTGTGGGATCTTTGTCGGGTTTTGGTATTAGGGTGATGGTG	EMBV3_38037
18	266	136	EMBV3_11387	FALSE	SAP30BP		unmapped	AAGGAAGCGAGGCTGTGAAGAGCTGACCTGCTTCCCCAGAGTGGGCAGGGGTTCAGAAAA	EMBV3_11387
19	266	134	EMBV3_16492	FALSE	DAZAP1		unmapped	GGCGGTGGCTGTGGGTACCTGGACTGAGGTTTTTAAATATATTTCTTTCTCTAACCCATC	EMBV3_16492
20	266	132	EMBV3_25811	FALSE	LOC789747		unmapped	CCGGGACCCCTCCCTCAGTAACCCCACTGCTTCCCCCTCCTTGGTATAAGTGCAATTAAA	EMBV3_25811

Total number of rows: 45220

Table truncated, full table size 5149 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL18537_041017_D_GEO_20120517.txt.gz	1.4 Mb	(ftp)(http)	TXT

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