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Status
Public on Jul 22, 2016
Title
Agilent-042004 gallus_exp_microarray_SLagarrigue_8x60k_V2_july2012
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Gallus gallus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16042004 or 2542004.
Contributor(s)
Lagarrigue S Submission date
Jan 12, 2015
Last update date
Aug 29, 2017
Contact name
Colette DESERT
E-mail(s)
[email protected] Organization name
Agrocampus INRA UMR1348 PEGASE
Street address
65 Rue de St Brieuc
City
Rennes
ZIP/Postal code
35042
Country
France
Samples (210)
GSM1592589 , GSM1592590 , GSM1592591 , GSM1592592 , GSM1592593 , GSM1592594
GSM1592595 ,
GSM1592596 ,
GSM2735425 ,
GSM2735426 ,
GSM2735427 ,
GSM2735428 ,
GSM2735429 ,
GSM2735430 ,
GSM2735431 ,
GSM2735432 ,
GSM2735433 ,
GSM2735434 ,
GSM2735435 ,
GSM2735436 ,
GSM2735437 ,
GSM2735438 ,
GSM2735439 ,
GSM2735440 ,
GSM2735441 ,
GSM2735442 ,
GSM2735443 ,
GSM2735444 ,
GSM2735445 ,
GSM2735446 ,
GSM2735447 ,
GSM2735448 ,
GSM2788094 ,
GSM2788095 ,
GSM2788096 ,
GSM2788097 ,
GSM2788098 ,
GSM2788099 ,
GSM2788100 ,
GSM2788101 ,
GSM2788102 ,
GSM2788103 ,
GSM2788104 ,
GSM2788105 ,
GSM2788106 ,
GSM2788107 ,
GSM2788108 ,
GSM2788109 ,
GSM2788110 ,
GSM2788111 ,
GSM2788112 ,
GSM2788113 ,
GSM2788114 ,
GSM2788115 ,
GSM2788116 ,
GSM2788117 ,
GSM2788118 ,
GSM2788119 ,
GSM2788120 ,
GSM2788121 ,
GSM2788122 ,
GSM2788123 ,
GSM2788124 ,
GSM2788125 ,
GSM2788126 ,
GSM2788127 ,
GSM2788128 ,
GSM2788129 ,
GSM2788130 ,
GSM2788131 ,
GSM2788132 ,
GSM2788133 ,
GSM2788134 ,
GSM2788135 ,
GSM2788136 ,
GSM2788137 ,
GSM2788138 ,
GSM2788139 ,
GSM2788140 ,
GSM2788141 ,
GSM2788142 ,
GSM2788143 ,
GSM2788144 ,
GSM2788145 ,
GSM2788146 ,
GSM2788147 ,
GSM2788148 ,
GSM2788149 ,
GSM2788150 ,
GSM2788151 ,
GSM2788152 ,
GSM2788153 ,
GSM2788154 ,
GSM2788155 ,
GSM2788156 ,
GSM2788157 ,
GSM2788158 ,
GSM2788159 ,
GSM2788160 ,
GSM2788161 ,
GSM2788162 ,
GSM2788163 ,
GSM2788164 ,
GSM2788165 ,
GSM2788166 ,
GSM2788167 ,
GSM2788168 ,
GSM2788169 ,
GSM2788170 ,
GSM2788171 ,
GSM2788172 ,
GSM2788173 ,
GSM2788174 ,
GSM2788175 ,
GSM2788176 ,
GSM2788177 ,
GSM2788178 ,
GSM2788179 ,
GSM2788180 ,
GSM2788181 ,
GSM2788182 ,
GSM2788183 ,
GSM2788184 ,
GSM2788185 ,
GSM2788186 ,
GSM2788187 ,
GSM2788188 ,
GSM2788189 ,
GSM2788190 ,
GSM2788191 ,
GSM2788192 ,
GSM2788193 ,
GSM2788194 ,
GSM2788195 ,
GSM2788196 ,
GSM2788197 ,
GSM2788198 ,
GSM2788199 ,
GSM2788200 ,
GSM2788201 ,
GSM2788202 ,
GSM2788203 ,
GSM2788204 ,
GSM2788205 ,
GSM2788206 ,
GSM2788207 ,
GSM2788208 ,
GSM2788209 ,
GSM2788210 ,
GSM2788211 ,
GSM2788212 ,
GSM2788213 ,
GSM2788214 ,
GSM2788215 ,
GSM2788216 ,
GSM2788217 ,
GSM2788218 ,
GSM2788219 ,
GSM2788220 ,
GSM2788221 ,
GSM2788222 ,
GSM2788223 ,
GSM2788224 ,
GSM2788225 ,
GSM2788226 ,
GSM2788227 ,
GSM2788228 ,
GSM2788229 ,
GSM2788230 ,
GSM2788231 ,
GSM2788232 ,
GSM2788233 ,
GSM2788234 ,
GSM2788235 ,
GSM2788236 ,
GSM2788237 ,
GSM2788238 ,
GSM2788239 ,
GSM2788240 ,
GSM2788241 ,
GSM2788242 ,
GSM2788243 ,
GSM2788244 ,
GSM2788245 ,
GSM2788246 ,
GSM2788247 ,
GSM2788248 ,
GSM2788249 ,
GSM2788250 ,
GSM2788251 ,
GSM2788252 ,
GSM2788253 ,
GSM2788254 ,
GSM2788255 ,
GSM2788256 ,
GSM2788257 ,
GSM2788258 ,
GSM2788259 ,
GSM2788260 ,
GSM2788261 ,
GSM2788262 ,
GSM2788263 ,
GSM2788264 ,
GSM2788265 ,
GSM2788266 ,
GSM2788267 ,
GSM2788268 ,
GSM2788269 ,
GSM2788270 ,
GSM2788271 Series (7)
GSE65331 Transcriptomes of whole blood and PBMC in chickens.
GSE102358 Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens
GSE104038 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Liver]
GSE104039 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Adipose tissue]
GSE104040 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [Muscle]
GSE104041 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet [PBMC]
GSE104042 Transcriptome profile of liver, adipose tissue, muscle and PBMC in genetically fat and lean chicken lines submitted to high-fiber and high-fat diet versus standard high-starch diet
Data table header descriptions ID Agilent feature number
CONTROL_TYPE Gene_ID Gene_ID_Accession
GB_ACC GenBank Accession number
Gene_symbol Gene Symbol
GENE_NAME Gene Name
DESCRIPTION Description
SEQUENCE Sequence
ProbeName unicID_noControl SPOT_ID CONTROL_TYPE Control type
Data table ID CONTROL_TYPE Gene_ID GB_ACC Gene_symbol GENE_NAME DESCRIPTION SEQUENCE ProbeName unicID_noControl SPOT_ID 1
pos
GE_BrightCorner
CONTROL
2
pos
DarkCorner
CONTROL
3
pos
DarkCorner
CONTROL
4
FALSE
ENSGALG00000012377
HNMT
GAGAACAGAAATGGGAAGGTGATTTTTAATAACAGCATGAGTGTAATAATGATTGAGCCC
seq_RIGG02544
ID_1
5
FALSE
ENSGALG00000004460
FOXK1
forkhead box K1
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NSF2] [ENSGALT00000040858]
CGCATTGACCCTGCCTCTGAAGCTAAACTAGTAGAGCAAGCATTTAGAAAACGAAGGCAA
A_87_P009088
ID_2
6
FALSE
ENSGALG00000013124
FHOD3
TAGGAAGTCATTGAGAAGGACACTAAAGAGCGGACTGACACCAGAAGAAGCCAAAGCATT
T021422_G013124_FHOD3_420952
ID_3
7
FALSE
ENSGALG00000014687
EPHA1
EPH receptor A1
Gallus gallus EPH receptor A1 (EPHA1), mRNA [NM_204360]
ATTGGAGAATGATGCAGAGGGAACATATGAAACCAAGGGTGGTAAGATTCCCATCCGATG
A_87_P108488
ID_4
8
FALSE
ENSGALG00000017219
C11orf54
chromosome 1 open reading frame, human C11orf54
chromosome 11 open reading frame 54 [Source:HGNC Symbol;Acc:30204] [ENSGALT00000027832]
GTAACTGAAGGGCTTATGGCTGAATTTGAGCCGTAATTTTCATTAAACCATTACTAATGC
A_87_P113528
ID_5
9
FALSE
ENSGALG00000001030
SCAMP4
TTTTGCTCCTTTTATCATTATCTGAAAAGGTCATTTGCATTCCCCTCCGTACGCTCCGCT
T001527_G001030_SCAMP4_420081
ID_6
10
FALSE
ENSGALG00000008009
BCAP29
B-cell receptor-associated protein 29
Gallus gallus B-cell receptor-associated protein 29 (BCAP29), mRNA [NM_001097645]
ATGCACTGCTGGTCACAATCCAGATTCCACTAACATATCTTGGCTGCCAGTATATTATTT
A_87_P023872
ID_7
11
FALSE
ENSGALG00000024289
ATTGTGTTTGGTTGTAATTCCCCTTCTGGCTCTCTGCTCACTGGAATATTATGCCCAGTC
T041025_G024289
ID_8
12
FALSE
GB
CCGACGGCGGGGAGCTCGACCCCGTTCCGCCCGTACGCCGTGGAAACCCCCCTGGCGTAA
A_87_P302543
ID_9
13
FALSE
ENSGALG00000006706
USP6NL
USP6 N-terminal like
Gallus gallus USP6 N-terminal like (USP6NL), mRNA [NM_001030840]
ACGATGGTTCTGTAATTCATAACAAAGCTGTACAATTTATTTGTGCAAGCAACACAAAGC
A_87_P051791
ID_10
14
FALSE
ENSGALG00000002119
C16orf62
chromosome 14 open reading frame, human C16orf62
chromosome 16 open reading frame 62 [Source:HGNC Symbol;Acc:24641] [ENSGALT00000003310]
TATGCAGAGTATTCTATATTCTCTAGCACGCTATATCACTGAATAAAGCAGTTTGCAGCT
A_87_P072371
ID_11
15
FALSE
GB
ATCCTGTCAAGCTGCGTCCGAAGGGAACGGTTTCTCACGGGCCAGCTGAAGGACGAGGCA
A_87_P302673
ID_12
16
FALSE
ENSGALG00000019445
COX6C
cytochrome c oxidase subunit VIc
Gallus gallus finished cDNA, clone ChEST922c3. [CR390196]
TGTTTCACTTCTGTTTGCCACATGAAGGGTGTGTGAATCTTAAACTGTCAGGAAATAACA
A_87_P014310
ID_13
17
FALSE
AGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCC
T040139_G023883
ID_14
18
FALSE
ENSGALG00000004363
MCM3AP
minichromosome maintenance complex component 3 associated protein
minichromosome maintenance complex component 3 associated protein [Source:HGNC Symbol;Acc:6946] [ENSGALT00000006957]
TTATAGAAATGCAGGTAAGGATACTGCTAATGGGAGGAGTTAGAGAATCATTCTGTGGGC
A_87_P081871
ID_15
19
FALSE
ENSGALG00000023768
EPHA2
EPH receptor A2
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NP16] [ENSGALT00000030487]
CCGGCATCCCTCCCACCTTCCGCTTTATTTATTATTTTTTGAGGTTGTTGTTGTTGTTGT
A_87_P065696
ID_16
20
FALSE
ENSGALG00000013026
CECR5
cat eye syndrome chromosome region, candidate 5
cat eye syndrome chromosome region, candidate 5 [Source:HGNC Symbol;Acc:1843] [ENSGALT00000021270]
TACATAGTGCAGGATGTGAATGAAGCTGTGCTACTTGCTTTTGAGAAGGAGAACTGGAGT
A_87_P107838
ID_17
62976 11707 Kbytes .Supplementary data files not provided
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