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Platform GPL2078 Query DataSets for GPL2078
Status Public on Jun 29, 2005
Title Human tiling array using Nimblegen platform, set 27 of 38
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
 
Description High density oligonucleotide array of Nimblegen. 50mers designed for non-repetitive regions of human genome based on UCSC HG16. There are a total of 38 arrays. This is set 27.
Keywords = Nimblegen
Keywords = human tiling array
Keywords = LICR renlab
 
Web link http://www.nimblegen.com/
Contributor(s) Kim TH, Barrera LO, Zhang M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B
Submission date May 17, 2005
Last update date Oct 27, 2010
Contact name Chunxu Qu
E-mail(s) [email protected]
Phone (858)822-5767
Organization name Ludwig Institute for Cancer Research
Department Gene Regulation
Lab RenLab
Street address
City San Diego
State/province CA
ZIP/Postal code 92093
Country USA
 
Samples (1) GSM51762
Series (1)
GSE2672 A high-resolution map of active promoters in the human genome

Data table header descriptions
ID
Probe ID probe id
Chromosome chromosome
Position position
SEQUENCE probe sequence
Comment comment

Data table
ID Probe ID Chromosome Position SEQUENCE Comment
1 CHR12P057293930 CHR12 57293930 AATAGACCCCTTTGAGGTTTTGTCTTGGGATACCAGTTTCAAGTAGGGAG SET27
2 CHR12P057294030 CHR12 57294030 AGAATGTACTTGGGACTATCTCAAAGAGACATCTGTTCTCAGAGAGTGTT SET27
3 CHR12P057294130 CHR12 57294130 ATATTCTCAGATTCAGACTTCTCTTTGACTGAAACATGAAGTCTTTGAAA SET27
4 CHR12P057294230 CHR12 57294230 AAAAGGTGTTCTTCTATGCTTTCAAGAAACATTAGAGAAGCCAGCCCGAA SET27
5 CHR12P057294330 CHR12 57294330 ATTATGAGGAGAGAGGGAAAGGATGCTCATGTGTGTTTAGTTTCTATTAT SET27
6 CHR12P057294485 CHR12 57294485 CCTTGTTCCAGGGCCCCATTGGAGGCCCAAGCCTCTTGAGGTTTGTGGGT SET27
7 CHR12P057294585 CHR12 57294585 CCTAATTAGCCAAGAAGCATAGAATAAGCATGCTCAGAAGTTCATAGGGG SET27
8 CHR12P057294685 CHR12 57294685 CTATTGCTAGAATGATAGAGTCTTTTTAAAAAGATTAGAGAAGCAACGTT SET27
9 CHR12P057294785 CHR12 57294785 ACTTGGATACTCCTATGGACAAGCTCCAGAAGTTTATAAAGTAGCCTTTC SET27
10 CHR12P057294957 CHR12 57294957 CACCATGTAGGCAGAGCCCTCTGTAGAGCAGAGGCGTTCCCTCGGGTTTT SET27
11 CHR12P057295057 CHR12 57295057 TTAGCAAAGCCAGGGGACCAATCACTAGATGCCCATGGAATGACATTTCA SET27
12 CHR12P057295157 CHR12 57295157 AGACCTGTCCAGCAGCCTACATATGGTAGAGAAATTTATTACTATTTCCT SET27
13 CHR12P057295313 CHR12 57295313 CTAATGTTCAACAAAGCACATTTATTGCAGAATTTAGAGGCCAGTCACAT SET27
14 CHR12P057295413 CHR12 57295413 GAGGTTTTCAAGAAAGAAAACTCTTGAGCTTTTTTTCCTGAGAAATCAGC SET27
15 CHR12P057295513 CHR12 57295513 CTGATAAATCATACAAGGGTTTGTAATTATTTCAGTACCTTCCTCTGAAG SET27
16 CHR12P057295613 CHR12 57295613 GGAAAACACATTTATTTTTGGAAATTTAGCAATATTTTGCTTGTTTTGTT SET27
17 CHR12P057295713 CHR12 57295713 GTAGTTGAAGTGCCTAATGTCAACCAATGTTGAGCATCTACTCTGTGTTC SET27
18 CHR12P057296087 CHR12 57296087 AAACTTTCTATTTGGGGGTAAAGGTGAGGGATCAAGGTTAGACAAGACTC SET27
19 CHR12P057296329 CHR12 57296329 GGCAAACAGCATTTGTTGAGGCCAAGTTATGGTGACCCTACATACCAAGT SET27
20 CHR12P057296429 CHR12 57296429 AAGGAACTTGGCATTTTCTGAACCATGATTTAGGAAAACTTATATGGTAA SET27

Total number of rows: 389199

Table truncated, full table size 36168 Kbytes.




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Supplementary data files not provided
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