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Platform GPL24239 Query DataSets for GPL24239
Status Public on Nov 08, 2017
Title Agilent-048242 Salmonella_Enterica_str14028S [Probe Name Version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description NC_016856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S All Genes

Arrays of this design have barcodes that begin with 16048242 or 2548242.
 
Submission date Nov 07, 2017
Last update date Nov 08, 2017
Contact name smarajit chakraborty
E-mail(s) [email protected]
Phone 83682977
Organization name Mechanobiology Institute
Street address T-Lab, 5A Engineering Drive 1, NUS
City singapore
ZIP/Postal code 117411
Country Singapore
 
Samples (8) GSM2844076, GSM2844077, GSM2844078, GSM2844079, GSM2844080, GSM2844081 
Series (2)
GSE106629 To compare the transcriptome of ompR null strains with wild-type strain of S. Typhimurium during osmotic stress
GSE106630 To compare the transcriptome of ompR null strains with wild-type strain of E. coli and S. Typhimurium during stress

Data table header descriptions
ID Probe Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
GE_BrightCorner GE_BrightCorner pos
DarkCorner DarkCorner pos
CUST_1534_PI428912647 CUST_1534_PI428912647 FALSE STM14_1550 unmapped GCGGATTTCAGGCAACTGCCTGAAAGACAATCTCTACGTGAAAAACGGCGTTGTCATTAA
CUST_2878_PI428912647 CUST_2878_PI428912647 FALSE purF unmapped TAATGACGACGCCAAAGCGGTGCTGTTCCAGAACGAAATGGAAAACCTGGAAATGCATAA
CUST_4068_PI428912647 CUST_4068_PI428912647 FALSE rplV unmapped ACGATCTGAAAGTTACGAAAATTTTCGTAGACGAAGGCCCGAGCATGAAGCGCATTATGC
CUST_1695_PI428912647 CUST_1695_PI428912647 FALSE ssaN unmapped AAGGATGAAGTATGCGGACCCGAGCTACTTATAGAAAAATTACACCAAATACTCACCGAG
CUST_4041_PI428912647 CUST_4041_PI428912647 FALSE sun unmapped TACGACAACCTAAAGCGTCTTGGGATGAAAGCGACAGTTAAACAAGGGGATGGACGTTAT
CUST_4949_PI428912647 CUST_4949_PI428912647 FALSE STM14_5050 unmapped AAACCGATCTATTTCGGTACAGGGCAATGGAGCCTTGAAATTACATCTATTTACCCGGAG
CUST_5061_PI428912647 CUST_5061_PI428912647 FALSE STM14_5162 unmapped ACCCTGTGTAGTGTGCTGATTGTCAGCAGTTTTATCTATGTGTGGGTCACGACGTATTAA
CUST_1828_PI428912647 CUST_1828_PI428912647 FALSE yneG unmapped CAACAGTATATTGTCAGCGTTATCCATTACTGGCTGGTCATACAAATGAATCAGCGGTAG
CUST_4998_PI428912647 CUST_4998_PI428912647 FALSE STM14_5099 unmapped TACATCACTAATGGTATGACGGGAGAAACCACCAACTACAAAGATACATACCAAATCCGC
CUST_5279_PI428912647 CUST_5279_PI428912647 FALSE idnK unmapped ATGAACATGATATTGCGCGTATCGATGTTAATCATGACATCGAGCACGTGACGGAGCAGT
CUST_3117_PI428912647 CUST_3117_PI428912647 FALSE STM14_3154 unmapped GTCGTGTTGACCCTGATAACGAAAAAATATGTCGCAACGGTTTTAGCCAAAATTCATTAA
CUST_345_PI428912647 CUST_345_PI428912647 FALSE STM14_0346 unmapped GTGAAAAAGTCGATGAAGCATATTAAGGCGGGGGTAAATAATGTGGTGAACGGGGATTAA
CUST_2767_PI428912647 CUST_2767_PI428912647 FALSE micF unmapped GCGGTCACTATTTTAGTTGCGAATGAAGATTCTGTTTTATCATTCAGTGCTATGAATTTC
CUST_1248_PI428912647 CUST_1248_PI428912647 FALSE STM14_1262 unmapped ATTTCTTCCGTTGAGGGAAGTATGTCAGAGGCATTCTGGTATTATACCGGGTGCATGTAA
CUST_2262_PI428912647 CUST_2262_PI428912647 FALSE yebG unmapped AGAAGATGTCATTTACCAGTAAAAAGGAAGCCGACGCCTGGGACAAAATGCTCGATACTG
CUST_2948_PI428912647 CUST_2948_PI428912647 FALSE zipA unmapped TCAGGCTTTAAATTTGGCGATATGAATATTTTCCATCGTCATTTGAGCCCGGACGGCAGC
CUST_2552_PI428912647 CUST_2552_PI428912647 FALSE rfbX unmapped GCTTTAACTGTTTTTTGGGGGCTTCCACTAACTTACTTAATTAAGGCAAATAAGGGATAA
CUST_3138_PI428912647 CUST_3138_PI428912647 FALSE STM14_3178 unmapped ATCCTGAGTCGTTGCACGAAAAAACGGATGATGAACTGATGATCCTGGGCGAAGGTATTA

Total number of rows: 5472

Table truncated, full table size 672 Kbytes.




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Supplementary file Size Download File type/resource
GPL24239_048242_D_GEO_20130319.txt.gz 2.2 Mb (ftp)(http) TXT

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