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GEO accession:
Series GSE106630
Query DataSets for GSE106630
Status
Public on Nov 08, 2017
Title
To compare the transcriptome of ompR null strains with wild-type strain of E. coli and S. Typhimurium during stress
Platform organisms
Escherichia coli O157:H7 str. EDL933
;
Escherichia coli CFT073
;
Escherichia coli O157:H7 str. Sakai
;
Escherichia coli str. K-12 substr. MG1655
;
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Sample organisms
Escherichia coli str. K-12 substr. MG1655
;
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Experiment type
Expression profiling by array
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
29138484
,
30524381
Submission date
Nov 07, 2017
Last update date
Apr 16, 2021
Contact name
smarajit chakraborty
E-mail(s)
[email protected]
Phone
83682977
Organization name
Mechanobiology Institute
Street address
T-Lab, 5A Engineering Drive 1, NUS
City
singapore
ZIP/Postal code
117411
Country
Singapore
Platforms (2)
GPL13359
Agilent-020097 E. coli Gene Expression Microarray (Probe Name version)
GPL24239
Agilent-048242 Salmonella_Enterica_str14028S [Probe Name Version]
Samples (19)
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GSM2844065
E.coli_WT pH 5.6 A
GSM2844066
E.coli_WT pH 5.6 B
GSM2844067
E.coli_WT pH 5.6 C
GSM2844068
E.coli_∆ompR pH 5.6 A
GSM2844069
E.coli_∆ompR pH 5.6 B
GSM2844070
E.coli_∆ompR pH 5.6 C
GSM2844071
E.coli_WT pH 7.2+15% sucrose A
GSM2844072
E.coli_WT pH 7.2+15% sucrose B
GSM2844073
E.coli_WT pH 7.2+15% sucrose C
GSM2844074
E.coli_∆ompR pH 7.2+15% sucrose A
GSM2844075
E.coli_∆ompR pH 7.2+15% sucrose B
GSM2844076
S. Typhimurium_WT pH 7.2+15% sucrose A
GSM2844077
S. Typhimurium_WT pH 7.2+15% sucrose B
GSM2844078
S. Typhimurium_WT pH 7.2+15% sucrose C
GSM2844079
S. Typhimurium_WT pH 7.2+15% sucrose D
GSM2844080
S. Typhimurium_∆ompR pH 7.2+15% sucrose A
GSM2844081
S. Typhimurium_∆ompR pH 7.2+15% sucrose B
GSM2844082
S. Typhimurium_∆ompR pH 7.2+15% sucrose C
GSM2844083
S. Typhimurium_∆ompR pH 7.2+15% sucrose D
This SuperSeries is composed of the following SubSeries:
GSE106628
To compare the transcriptome of ompR null strains with wild-type strain of E. coli during acid or osmotic stress
GSE106629
To compare the transcriptome of ompR null strains with wild-type strain of S. Typhimurium during osmotic stress
Relations
BioProject
PRJNA417471
Download family
Format
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TXT
Supplementary file
Size
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File type/resource
GSE106630_RAW.tar
34.2 Mb
(http)
(custom)
TAR (of TXT)
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