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Status
Public on Sep 26, 2023
Title
NanoString GeoMx Human Whole Transcriptome Atlas [do not use this platform, see NOTE below]
Technology type
other
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
NanoString
Manufacture protocol
See NanoString web site.
Catalog number
GMX-RNA-NGSHuWTA-4
Description
Human RNA for Illumina Systems. RNA Probe set that targets 18,000+ transcripts for human protein-coding genes plus ERCC negative controls to profile the whole transcriptome. Excludes uninformative high expressing targets such as ribosomal subunits. Includes RNA probes designed for Illumina NGS readout with the Seq Code library prep. *** IMPORTANT NOTE ***: For NanoString GeoMx Digital Spatial Profiling studies with raw data in FASTQ format, please submit your study using GEO's high throughput sequence data submission instructions at: https://www.ncbi.nlm.nih.gov/geo/info/seq.html
Submission date
Nov 22, 2021
Last update date
Aug 09, 2024
Contact name
Cheng Sun
E-mail(s)
[email protected]
Organization name
University of Science and Technology of China
Department
the First Affiliated Hospital of USTC
Lab
Department of Pathology
Street address
17, Lujiang Road
City
Hefei
State/province
Anhui
ZIP/Postal code
230036
Country
China
Samples (409)
GSM7807444 , GSM7807445 , GSM7807446 , GSM7807447 , GSM7807448 , GSM7807449
GSM7807450 ,
GSM7807451 ,
GSM7807452 ,
GSM7807453 ,
GSM7807454 ,
GSM7807455 ,
GSM7807456 ,
GSM7807457 ,
GSM7807458 ,
GSM7807459 ,
GSM7807460 ,
GSM7807461 ,
GSM7807462 ,
GSM7807463 ,
GSM7807464 ,
GSM7807465 ,
GSM7807466 ,
GSM7807467 ,
GSM7807468 ,
GSM7807469 ,
GSM7807470 ,
GSM7807471 ,
GSM7807472 ,
GSM7807473 ,
GSM7807474 ,
GSM7807475 ,
GSM7807476 ,
GSM7807477 ,
GSM7807478 ,
GSM7807479 ,
GSM7807480 ,
GSM7807481 ,
GSM7807482 ,
GSM7807483 ,
GSM7807484 ,
GSM7807485 ,
GSM7807486 ,
GSM7807487 ,
GSM7807488 ,
GSM7807489 ,
GSM7807490 ,
GSM7807491 ,
GSM7807492 ,
GSM7807493 ,
GSM7807494 ,
GSM7807495 ,
GSM7807496 ,
GSM7807497 ,
GSM7807498 ,
GSM7807499 ,
GSM7807500 ,
GSM7807501 ,
GSM7807502 ,
GSM7807503 ,
GSM7807504 ,
GSM7807505 ,
GSM7807506 ,
GSM7807507 ,
GSM7807508 ,
GSM7807509 ,
GSM7807510 ,
GSM7807511 ,
GSM7807512 ,
GSM7807513 ,
GSM7807514 ,
GSM7807515 ,
GSM7807516 ,
GSM7807517 ,
GSM7807518 ,
GSM7807519 ,
GSM7807520 ,
GSM7807521 ,
GSM7807522 ,
GSM7807523 ,
GSM7807524 ,
GSM7807525 ,
GSM7807526 ,
GSM7807527 ,
GSM7807528 ,
GSM7807529 ,
GSM7807530 ,
GSM7807531 ,
GSM7807532 ,
GSM7807533 ,
GSM7807534 ,
GSM7807535 ,
GSM7807536 ,
GSM7807537 ,
GSM7807538 ,
GSM7807539 ,
GSM8105899 ,
GSM8105900 ,
GSM8105901 ,
GSM8105902 ,
GSM8105903 ,
GSM8105904 ,
GSM8105905 ,
GSM8105906 ,
GSM8105907 ,
GSM8105908 ,
GSM8105909 ,
GSM8105910 ,
GSM8105911 ,
GSM8105912 ,
GSM8105913 ,
GSM8105914 ,
GSM8105915 ,
GSM8105916 ,
GSM8105917 ,
GSM8105918 ,
GSM8105919 ,
GSM8105920 ,
GSM8105921 ,
GSM8105922 ,
GSM8105923 ,
GSM8105924 ,
GSM8105925 ,
GSM8105926 ,
GSM8105927 ,
GSM8105928 ,
GSM8105929 ,
GSM8105930 ,
GSM8105931 ,
GSM8105932 ,
GSM8105933 ,
GSM8105934 ,
GSM8105935 ,
GSM8105936 ,
GSM8105937 ,
GSM8105938 ,
GSM8105939 ,
GSM8105940 ,
GSM8105941 ,
GSM8105942 ,
GSM8105943 ,
GSM8105944 ,
GSM8105945 ,
GSM8105946 ,
GSM8105947 ,
GSM8105948 ,
GSM8105949 ,
GSM8105950 ,
GSM8105951 ,
GSM8105952 ,
GSM8105953 ,
GSM8105954 ,
GSM8105955 ,
GSM8105956 ,
GSM8105957 ,
GSM8105958 ,
GSM8105959 ,
GSM8105960 ,
GSM8105961 ,
GSM8105962 ,
GSM8105963 ,
GSM8105964 ,
GSM8105965 ,
GSM8105966 ,
GSM8105967 ,
GSM8105968 ,
GSM8105969 ,
GSM8105970 ,
GSM8105971 ,
GSM8105972 ,
GSM8105973 ,
GSM8105974 ,
GSM8105975 ,
GSM8105976 ,
GSM8105977 ,
GSM8105978 ,
GSM8105979 ,
GSM8105980 ,
GSM8105981 ,
GSM8105982 ,
GSM8105983 ,
GSM8105984 ,
GSM8105985 ,
GSM8105986 ,
GSM8105987 ,
GSM8105988 ,
GSM8105989 ,
GSM8105990 ,
GSM8105991 ,
GSM8105992 ,
GSM8105993 ,
GSM8105994 ,
GSM8105995 ,
GSM8105996 ,
GSM8105997 ,
GSM8105998 ,
GSM8105999 ,
GSM8106000 ,
GSM8106001 ,
GSM8106002 ,
GSM8106003 ,
GSM8106004 ,
GSM8106005 ,
GSM8106006 ,
GSM8106007 ,
GSM8106008 ,
GSM8106009 ,
GSM8106010 ,
GSM8106011 ,
GSM8106012 ,
GSM8106013 ,
GSM8106014 ,
GSM8106015 ,
GSM8106016 ,
GSM8106017 ,
GSM8106018 ,
GSM8106019 ,
GSM8106020 ,
GSM8106021 ,
GSM8106022 ,
GSM8106023 ,
GSM8106024 ,
GSM8106025 ,
GSM8106026 ,
GSM8106027 ,
GSM8106028 ,
GSM8106029 ,
GSM8106030 ,
GSM8106031 ,
GSM8106032 ,
GSM8106033 ,
GSM8106034 ,
GSM8106035 ,
GSM8106036 ,
GSM8106037 ,
GSM8106038 ,
GSM8106039 ,
GSM8106040 ,
GSM8106041 ,
GSM8106042 ,
GSM8106043 ,
GSM8106044 ,
GSM8106045 ,
GSM8106046 ,
GSM8106047 ,
GSM8106048 ,
GSM8106049 ,
GSM8106050 ,
GSM8106051 ,
GSM8106052 ,
GSM8106053 ,
GSM8106054 ,
GSM8106055 ,
GSM8106056 ,
GSM8106057 ,
GSM8106058 ,
GSM8106059 ,
GSM8106060 ,
GSM8106061 ,
GSM8106062 ,
GSM8106063 ,
GSM8106064 ,
GSM8106065 ,
GSM8106066 ,
GSM8106067 ,
GSM8106068 ,
GSM8106069 ,
GSM8106070 ,
GSM8106071 ,
GSM8106072 ,
GSM8106073 ,
GSM8106074 ,
GSM8106075 ,
GSM8106076 ,
GSM8106077 ,
GSM8106078 ,
GSM8106079 ,
GSM8106080 ,
GSM8106081 ,
GSM8106082 ,
GSM8106083 ,
GSM8106084 ,
GSM8106085 ,
GSM8106086 ,
GSM8106087 ,
GSM8106088 ,
GSM8106089 ,
GSM8106090 ,
GSM8106091 ,
GSM8106092 ,
GSM8106093 ,
GSM8106094 ,
GSM8106095 ,
GSM8106096 ,
GSM8106097 ,
GSM8106098 ,
GSM8106099 ,
GSM8106100 ,
GSM8106101 ,
GSM8106102 ,
GSM8106103 ,
GSM8106104 ,
GSM8106105 ,
GSM8106106 ,
GSM8106107 ,
GSM8106108 ,
GSM8106109 ,
GSM8106110 ,
GSM8106111 ,
GSM8106112 ,
GSM8106113 ,
GSM8106114 ,
GSM8106115 ,
GSM8106116 ,
GSM8106117 ,
GSM8106118 ,
GSM8113820 ,
GSM8113821 ,
GSM8113822 ,
GSM8113823 ,
GSM8113824 ,
GSM8113825 ,
GSM8113826 ,
GSM8113827 ,
GSM8113828 ,
GSM8113829 ,
GSM8113830 ,
GSM8113831 ,
GSM8113832 ,
GSM8113833 ,
GSM8113834 ,
GSM8113835 ,
GSM8113836 ,
GSM8113837 ,
GSM8113838 ,
GSM8113839 ,
GSM8113840 ,
GSM8113841 ,
GSM8113842 ,
GSM8113843 ,
GSM8113844 ,
GSM8113845 ,
GSM8113846 ,
GSM8113847 ,
GSM8113848 ,
GSM8113849 ,
GSM8113850 ,
GSM8113851 ,
GSM8113852 ,
GSM8113853 ,
GSM8113854 ,
GSM8113855 ,
GSM8113856 ,
GSM8113857 ,
GSM8113858 ,
GSM8113859 ,
GSM8113860 ,
GSM8113861 ,
GSM8113862 ,
GSM8113863 ,
GSM8113864 ,
GSM8113865 ,
GSM8113866 ,
GSM8113867 ,
GSM8113868 ,
GSM8113869 ,
GSM8113870 ,
GSM8113871 ,
GSM8113872 ,
GSM8113873 ,
GSM8113874 ,
GSM8113875 ,
GSM8229162 ,
GSM8229163 ,
GSM8229164 ,
GSM8229165 ,
GSM8229166 ,
GSM8229167 ,
GSM8229168 ,
GSM8229169 ,
GSM8229170 ,
GSM8229171 ,
GSM8229172 ,
GSM8229173 ,
GSM8229174 ,
GSM8229175 ,
GSM8229176 ,
GSM8229177 ,
GSM8229178 ,
GSM8229179 ,
GSM8229180 ,
GSM8229181 ,
GSM8229182 ,
GSM8229183 ,
GSM8229184 ,
GSM8229185 ,
GSM8229186 ,
GSM8229187 ,
GSM8229188 ,
GSM8229189 ,
GSM8229190 ,
GSM8229191 ,
GSM8229192 ,
GSM8229193 ,
GSM8229194 ,
GSM8229195 ,
GSM8229196 ,
GSM8229197 ,
GSM8229198
Series (5)
GSE244117
Olfactory neuroblastoma mimics molecular subtypes and lineage trajectories of small cell lung cancer [Spatial transcriptomics on de-identified human ONB samples]
GSE244123
Olfactory neuroblastoma mimics molecular subtypes and lineage trajectories of small cell lung cancer
GSE256539
Digital Spatial Profiling identifies distinct molecular signatures of vascular lesions in Pulmonary Arterial Hypertension
GSE259311
Spatial transcriptomic profiling of precursor lesions of gallbladder adenocarcinoma
GSE265785
Characterization of HBV and co-infection with HDV and HIV through spatial transcriptomics
Data table header descriptions
ID
TargetName
ENTREZ_GENE_ID
Entez Gene ID
SPOT_ID
Total number of rows: 18677 Table truncated, full table size 359 Kbytes .
Supplementary data files not provided