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Platform GPL30991 Query DataSets for GPL30991
Status Public on Sep 26, 2023
Title NanoString GeoMx Human Whole Transcriptome Atlas [do not use this platform, see NOTE below]
Technology type other
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NanoString
Manufacture protocol See NanoString web site.
Catalog number GMX-RNA-NGSHuWTA-4
 
Description Human RNA for Illumina Systems.
RNA Probe set that targets 18,000+ transcripts for human protein-coding genes plus ERCC negative controls to profile the whole transcriptome. Excludes uninformative high expressing targets such as ribosomal subunits. Includes RNA probes designed for Illumina NGS readout with the Seq Code library prep.

*** IMPORTANT NOTE ***:
For NanoString GeoMx Digital Spatial Profiling studies with raw data in FASTQ format, please submit your study using GEO's high throughput sequence data submission instructions at: https://www.ncbi.nlm.nih.gov/geo/info/seq.html
 
Submission date Nov 22, 2021
Last update date Aug 09, 2024
Contact name Cheng Sun
E-mail(s) [email protected]
Organization name University of Science and Technology of China
Department the First Affiliated Hospital of USTC
Lab Department of Pathology
Street address 17, Lujiang Road
City Hefei
State/province Anhui
ZIP/Postal code 230036
Country China
 
Samples (409) GSM7807444, GSM7807445, GSM7807446, GSM7807447, GSM7807448, GSM7807449 
Series (5)
GSE244117 Olfactory neuroblastoma mimics molecular subtypes and lineage trajectories of small cell lung cancer [Spatial transcriptomics on de-identified human ONB samples]
GSE244123 Olfactory neuroblastoma mimics molecular subtypes and lineage trajectories of small cell lung cancer
GSE256539 Digital Spatial Profiling identifies distinct molecular signatures of vascular lesions in Pulmonary Arterial Hypertension

Data table header descriptions
ID
TargetName
ENTREZ_GENE_ID Entez Gene ID
SPOT_ID

Data table
ID TargetName ENTREZ_GENE_ID SPOT_ID
GXYLT1 GXYLT1 283464
RASGRP1 RASGRP1 10125
RBL2 RBL2 5934
ERI2 ERI2 112479
RAB43 RAB43 339122
NTNG2 NTNG2 84628
EGR4 EGR4 1961
CCDC34 CCDC34 91057
VSTM2A VSTM2A 222008
FAM185A FAM185A 222234
TACR3 TACR3 6870
CDK2AP2 CDK2AP2 10263
DNAH10 DNAH10 196385
TPSAB1 TPSAB1 64499
GJA3 GJA3 2700
TNRC18 TNRC18 84629
C10orf71 C10orf71 118461
PINLYP PINLYP 390940
YWHAH YWHAH 7533
PCED1A PCED1A 64773

Total number of rows: 18677

Table truncated, full table size 359 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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