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Platform GPL4617 Query DataSets for GPL4617
Status Public on Apr 02, 2007
Title Custom Nitrosomonas europaea GeneChip Array (Affymetrix)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Nitrosomonas europaea
Manufacturer Affymetrix, Inc.
Manufacture protocol see manufacturer's web site
Catalog number A4364-00-01
Support glass
Coating quartz
 
Description The array contains 192, 000 features. Probe length-24nt. Probes/gene-13.
 
Contributor(s) Gvakharia BO, Arp DJ, Sayavedra-Soto LA, Bottomley PJ
Submission date Dec 01, 2006
Last update date Apr 02, 2007
Contact name barbara gvakharia
Organization name OSU
Department Botany and Plant Pathology
Street address Cordley Hall 4097
City Corvallis
State/province OR
ZIP/Postal code 97331
Country USA
 
Samples (42) GSM149370, GSM149371, GSM149372, GSM149373, GSM149374, GSM149375 
Series (6)
GSE6488 Nitrosomonas europaea cells treated with chloroform for one hour and compared to untreated cells
GSE6594 Nitrosomonas europaea cells treated with chloromethane for one hour and compared to untreated cells
GSE7552 Genome-Wide Transcriptional Responses of Nitrosomonas europaea to Zinc

Data table header descriptions
ID Probe Set Name
Index
Identifier
Identifier Source
Description
Sequence Type
SPOT_ID identifies controls and intergenic regions
ORF locus tag
gene_name
plasmid

Data table
ID Index Identifier Identifier Source Description Sequence Type SPOT_ID ORF gene_name plasmid
AFFX-BioB-3_at 1 J04423.1 GenBank E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiot Control Sequence -- Control sequence
AFFX-BioB-5_at 2 J04423.1 GenBank E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiot Control Sequence -- Control sequence
AFFX-BioB-M_at 3 J04423.1 GenBank E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiot Control Sequence -- Control sequence
AFFX-BioC-3_at 4 J04423.1 GenBank E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiot Control Sequence -- Control sequence
AFFX-BioC-5_at 5 J04423.1 GenBank E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiot Control Sequence -- Control sequence
AFFX-BioDn-3_at 6 J04423.1 GenBank E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC pro Control Sequence -- Control sequence
AFFX-BioDn-5_at 7 J04423.1 GenBank E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC pro Control Sequence -- Control sequence
AFFX-CreX-3_at 8 X03453.1 GenBank Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Control Sequence -- Control sequence
AFFX-CreX-5_at 9 X03453.1 GenBank Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Control Sequence -- Control sequence
AFFX-DapX-3_at 10 L38424.1 GenBank B. subtilis GEN=jojG DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carbox Control Sequence -- Control sequence
AFFX-DapX-5_at 11 L38424.1 GenBank B. subtilis GEN=dapB DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carbox Control Sequence -- Control sequence
AFFX-DapX-M_at 12 L38424.1 GenBank B. subtilis GEN=dapB, jojF DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds Control Sequence -- Control sequence
AFFX-LysX-3_at 13 X17013.1 GenBank B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence -- Control sequence
AFFX-LysX-5_at 14 X17013.1 GenBank B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence -- Control sequence
AFFX-LysX-M_at 15 X17013.1 GenBank B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). Control Sequence -- Control sequence
AFFX-PheX-3_at 16 M24537.1 GenBank B. subtilis GEN=pheB DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (p Control Sequence -- Control sequence
AFFX-PheX-5_at 17 M24537.1 GenBank B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (p Control Sequence -- Control sequence
AFFX-PheX-M_at 18 M24537.1 GenBank B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofuncti Control Sequence -- Control sequence
AFFX-ThrX-3_at 19 X04603.1 GenBank B. subtilis GEN=thrB DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 1689-2151 of gb:X04603.1 DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). Control Sequence -- Control sequence
AFFX-ThrX-5_at 20 X04603.1 GenBank B. subtilis GEN=thrC DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). Control Sequence -- Control sequence

Total number of rows: 3495

Table truncated, full table size 376 Kbytes.






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