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Status
Public on Feb 28, 2007
Title
Penn/CHOP Homo sapiens 4.5K (BAC array for studying Neuroblastoma)
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
non commercial: University of Pennsylvania / Childrens Hospital of Philadelphia
Manufacture protocol
BAC clone starter cultures were grown in 700ul 2X YT broth with 12.5 ug/mL chloramphenicol at 37 deg C for ~15h. Full cultures of 2.5 mL broth were inoculated from starter cultures and grown for 15 h in 48-well blocks. DNA was extracted using QAGEN real prep kits using high throuhput 96 well blocks. BAC DNA was then amplified using degenerate oligonucliotide primers (Cheung and Nelson 1996). Each BAC was amplified twice at different annealing temperatures (58 and 60 deg C). PCR products were pooled and purified with 96 well QiaQuick kits. Each clone DNA was lyphilized and resuspended in 50% DMSO/water. A minimum of two replicates per clone were printed on each slide using the aqueous DMSO buffer as spotting solution. Arrays were printed on Corning CMT Ultra GAP slides.
Contributor(s)
Mosse Y , Greshock J Submission date
Feb 27, 2007
Last update date
Feb 28, 2007
Contact name
Jayanti Jagannathan
E-mail(s)
[email protected] Phone
2674262286
Organization name
Childrens Hospital of Philadelphia
Department
Oncology
Street address
34th & Civic center blvd
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Samples (716)
GSM174386 , GSM174387 , GSM174388 , GSM174389 , GSM174390 , GSM174391
GSM174392 ,
GSM174393 ,
GSM174394 ,
GSM174395 ,
GSM174396 ,
GSM174397 ,
GSM174398 ,
GSM174399 ,
GSM174400 ,
GSM174401 ,
GSM174402 ,
GSM174403 ,
GSM174404 ,
GSM174405 ,
GSM174406 ,
GSM174407 ,
GSM174408 ,
GSM174409 ,
GSM174410 ,
GSM174411 ,
GSM174412 ,
GSM174413 ,
GSM174414 ,
GSM174415 ,
GSM174416 ,
GSM174417 ,
GSM174418 ,
GSM174419 ,
GSM174420 ,
GSM174421 ,
GSM174422 ,
GSM174423 ,
GSM174424 ,
GSM174425 ,
GSM174426 ,
GSM174427 ,
GSM174428 ,
GSM174429 ,
GSM174430 ,
GSM174431 ,
GSM174432 ,
GSM174433 ,
GSM174434 ,
GSM174435 ,
GSM174436 ,
GSM174437 ,
GSM174438 ,
GSM174439 ,
GSM174440 ,
GSM174441 ,
GSM174442 ,
GSM174443 ,
GSM174444 ,
GSM174445 ,
GSM174446 ,
GSM174447 ,
GSM174448 ,
GSM174449 ,
GSM174450 ,
GSM174451 ,
GSM174452 ,
GSM174453 ,
GSM174454 ,
GSM174455 ,
GSM174456 ,
GSM174457 ,
GSM174458 ,
GSM174459 ,
GSM174460 ,
GSM174461 ,
GSM174462 ,
GSM174463 ,
GSM174464 ,
GSM174465 ,
GSM174466 ,
GSM174467 ,
GSM184380 ,
GSM184381 ,
GSM184382 ,
GSM184383 ,
GSM184384 ,
GSM184385 ,
GSM184386 ,
GSM184387 ,
GSM184388 ,
GSM184389 ,
GSM184390 ,
GSM184391 ,
GSM184392 ,
GSM184393 ,
GSM184394 ,
GSM184395 ,
GSM184396 ,
GSM184397 ,
GSM184398 ,
GSM184399 ,
GSM184400 ,
GSM184401 ,
GSM184402 ,
GSM184403 ,
GSM184404 ,
GSM184405 ,
GSM185077 ,
GSM185078 ,
GSM185079 ,
GSM185080 ,
GSM185081 ,
GSM185082 ,
GSM185083 ,
GSM185084 ,
GSM185085 ,
GSM185086 ,
GSM185087 ,
GSM185088 ,
GSM185089 ,
GSM185090 ,
GSM185091 ,
GSM185092 ,
GSM185093 ,
GSM185094 ,
GSM185095 ,
GSM185096 ,
GSM185121 ,
GSM185122 ,
GSM185123 ,
GSM185124 ,
GSM185125 ,
GSM185126 ,
GSM185127 ,
GSM185128 ,
GSM185129 ,
GSM185130 ,
GSM185131 ,
GSM185132 ,
GSM185133 ,
GSM185134 ,
GSM185135 ,
GSM185136 ,
GSM185137 ,
GSM185138 ,
GSM185139 ,
GSM185140 ,
GSM185141 ,
GSM185142 ,
GSM185143 ,
GSM185144 ,
GSM185145 ,
GSM185146 ,
GSM185147 ,
GSM185148 ,
GSM185149 ,
GSM185150 ,
GSM185151 ,
GSM185152 ,
GSM185153 ,
GSM185154 ,
GSM185155 ,
GSM185156 ,
GSM185157 ,
GSM185158 ,
GSM185159 ,
GSM185160 ,
GSM185161 ,
GSM185162 ,
GSM185163 ,
GSM185164 ,
GSM185165 ,
GSM185166 ,
GSM185167 ,
GSM185168 ,
GSM185169 ,
GSM185170 ,
GSM185171 ,
GSM185172 ,
GSM185173 ,
GSM185174 ,
GSM185175 ,
GSM185176 ,
GSM185177 ,
GSM185178 ,
GSM185179 ,
GSM185180 ,
GSM185181 ,
GSM185182 ,
GSM185183 ,
GSM185184 ,
GSM185185 ,
GSM185186 ,
GSM185187 ,
GSM185188 ,
GSM185189 ,
GSM185190 ,
GSM185191 ,
GSM185192 ,
GSM185193 ,
GSM185194 ,
GSM185195 ,
GSM185196 ,
GSM185197 ,
GSM185198 ,
GSM185199 ,
GSM185200 ,
GSM185201 ,
GSM185202 ,
GSM185203 ,
GSM185204 ,
GSM185205 ,
GSM185206 ,
GSM185207 ,
GSM185208 ,
GSM185209 ,
GSM185210 ,
GSM185211 ,
GSM185212 ,
GSM185213 ,
GSM185214 ,
GSM185215 ,
GSM185216 ,
GSM185217 ,
GSM185218 ,
GSM185219 ,
GSM185220 ,
GSM185221 ,
GSM185222 ,
GSM185223 ,
GSM185224 ,
GSM185225 ,
GSM185226 ,
GSM185227 ,
GSM185228 ,
GSM185229 ,
GSM185230 ,
GSM185231 ,
GSM185232 ,
GSM185233 ,
GSM185234 ,
GSM185235 ,
GSM185236 ,
GSM185237 ,
GSM185238 ,
GSM185239 ,
GSM185240 ,
GSM185241 ,
GSM185242 ,
GSM185243 ,
GSM185244 ,
GSM185245 ,
GSM185246 ,
GSM185247 ,
GSM185248 ,
GSM185249 ,
GSM185250 ,
GSM185251 ,
GSM185252 ,
GSM185253 ,
GSM185254 ,
GSM185255 ,
GSM185256 ,
GSM185257 ,
GSM185258 ,
GSM185259 ,
GSM185260 ,
GSM185261 ,
GSM185262 ,
GSM185263 ,
GSM185264 ,
GSM185265 ,
GSM185266 ,
GSM185267 ,
GSM185268 ,
GSM185269 ,
GSM185270 ,
GSM185271 ,
GSM185272 ,
GSM185273 ,
GSM185274 ,
GSM185275 ,
GSM185276 ,
GSM185277 ,
GSM185278 ,
GSM185279 ,
GSM185280 ,
GSM185281 ,
GSM185282 ,
GSM185283 ,
GSM185284 ,
GSM185285 ,
GSM185286 ,
GSM185287 ,
GSM185306 ,
GSM185307 ,
GSM185308 ,
GSM185309 ,
GSM185310 ,
GSM185311 ,
GSM185312 ,
GSM185313 ,
GSM185314 ,
GSM185315 ,
GSM185316 ,
GSM185317 ,
GSM185318 ,
GSM185319 ,
GSM185320 ,
GSM185321 ,
GSM185322 ,
GSM185323 ,
GSM185324 ,
GSM185325 ,
GSM185326 ,
GSM185327 ,
GSM185328 ,
GSM185329 ,
GSM185330 ,
GSM185331 ,
GSM185332 ,
GSM185333 ,
GSM185334 ,
GSM185335 ,
GSM185336 ,
GSM185337 ,
GSM185338 ,
GSM185339 ,
GSM185340 ,
GSM185341 ,
GSM185342 ,
GSM185343 ,
GSM185344 ,
GSM185345 ,
GSM185346 ,
GSM185347 ,
GSM185348 ,
GSM185349 ,
GSM185350 ,
GSM185351 ,
GSM185352 ,
GSM185353 ,
GSM185354 ,
GSM185355 ,
GSM185356 ,
GSM185357 ,
GSM185358 ,
GSM185359 ,
GSM185360 ,
GSM185361 ,
GSM185362 ,
GSM185363 ,
GSM185364 ,
GSM185365 ,
GSM185366 ,
GSM185367 ,
GSM185368 ,
GSM185369 ,
GSM185370 ,
GSM185371 ,
GSM185372 ,
GSM185373 ,
GSM185374 ,
GSM185375 ,
GSM185376 ,
GSM185377 ,
GSM185378 ,
GSM185379 ,
GSM185380 ,
GSM185381 ,
GSM185382 ,
GSM185383 ,
GSM185384 ,
GSM185385 ,
GSM185386 ,
GSM185387 ,
GSM185388 ,
GSM185389 ,
GSM185390 ,
GSM185391 ,
GSM185392 ,
GSM185393 ,
GSM185394 ,
GSM185395 ,
GSM185396 ,
GSM185397 ,
GSM185398 ,
GSM185399 ,
GSM185400 ,
GSM185401 ,
GSM185402 ,
GSM185403 ,
GSM185404 ,
GSM185405 ,
GSM185406 ,
GSM185407 ,
GSM185408 ,
GSM185409 ,
GSM185410 ,
GSM185411 ,
GSM185412 ,
GSM185413 ,
GSM185414 ,
GSM185415 ,
GSM185416 ,
GSM185417 ,
GSM185418 ,
GSM185419 ,
GSM185420 ,
GSM185421 ,
GSM185422 ,
GSM185423 ,
GSM185424 ,
GSM185425 ,
GSM185426 ,
GSM185427 ,
GSM185428 ,
GSM185429 ,
GSM185430 ,
GSM185431 ,
GSM185432 ,
GSM185433 ,
GSM185434 ,
GSM185435 ,
GSM185436 ,
GSM185437 ,
GSM185438 ,
GSM185439 ,
GSM185440 ,
GSM185441 ,
GSM185442 ,
GSM185443 ,
GSM185444 ,
GSM185445 ,
GSM185446 ,
GSM185447 ,
GSM185448 ,
GSM185449 ,
GSM185450 ,
GSM185451 ,
GSM185452 ,
GSM185453 ,
GSM185454 ,
GSM185455 ,
GSM185456 ,
GSM185457 ,
GSM185458 ,
GSM185459 ,
GSM185460 ,
GSM185461 ,
GSM185462 ,
GSM185463 ,
GSM185464 ,
GSM185465 ,
GSM185466 ,
GSM185467 ,
GSM185468 ,
GSM185469 ,
GSM185470 ,
GSM185471 ,
GSM185472 ,
GSM185473 ,
GSM185474 ,
GSM185475 ,
GSM186426 ,
GSM186427 ,
GSM186428 ,
GSM186429 ,
GSM186430 ,
GSM186431 ,
GSM186432 ,
GSM186433 ,
GSM186434 ,
GSM186435 ,
GSM186436 ,
GSM186437 ,
GSM186438 ,
GSM186439 ,
GSM186440 ,
GSM186441 ,
GSM186442 ,
GSM186443 ,
GSM186444 ,
GSM186445 ,
GSM186446 ,
GSM186447 ,
GSM186448 ,
GSM186449 ,
GSM186450 ,
GSM186451 ,
GSM186452 ,
GSM186453 ,
GSM186454 ,
GSM186455 ,
GSM186456 ,
GSM186457 ,
GSM186458 ,
GSM186459 ,
GSM186460 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (3)
GSE7230 Genome-wide assessment of DNA aberrations in human neuroblastoma primary tumors using BAC array
GSE7692 Cancer cell lines as genetic models of their parent histology: analyses based on array comparative genomic hybridization
GSE8933 Germline and Somatic Disruption of DLG2 in Neuroblastoma
Data table header descriptions ID CHROMOSOME_NUM Chromosome
RANGE_START Start location
RANGE_END End location
CLONE_ID DESCRIPTION BAC description
Data table ID CHROMOSOME_NUM RANGE_START RANGE_END CLONE_ID DESCRIPTION RP11-421C4
chr1
1297543
1528233
RP11-421C4
BAC_end_pair UCSC
RP11-730K14
chr1
1664960
1844239
RP11-730K14
BAC_end_pair UCSC
CTD-2610K21
chr1
1787305
1913240
CTD-2610K21
BAC_end_pair WEBER
RP11-722H19
chr1
1924205
2120036
RP11-722H19
BAC_end_pair UCSC
RP11-82D16
chr1
2171400
2171718
RP11-82D16
UCSC_STS_Map
RP11-83K22
chr1
2187928
2356539
RP11-83K22
BCGSC_ES_Mapped
RP11-809B17
chr1
2865914
3034294
RP11-809B17
BCGSC_ES_Mapped
RP11-730M7
chr1
3175749
3356973
RP11-730M7
BAC_end_pair UCSC
RP11-151F10
chr1
3386095
3547473
RP11-151F10
BAC_end_pair UCSC
RP11-62M23
chr1
3608018
3608342
RP11-62M23
UCSC_STS_Map
RP11-718D19
chr1
3927454
4121175
RP11-718D19
BAC_end_pair UCSC
RP11-118P10
chr1
4150383
4295554
RP11-118P10
BCGSC_ES_Mapped
RP11-818B16
chr1
4357954
4579734
RP11-818B16
BCGSC_ES_Mapped
RP11-111O5
chr1
4502019
4502242
RP11-111O5
UCSC_STS_Map
RP11-135B10
chr1
4934916
5111980
RP11-135B10
BAC_end_pair UCSC
RP11-245D8
chr1
5135454
5302459
RP11-245D8
BAC_end_pair UCSC
RP11-33M12
chr1
5824356
5962228
RP11-33M12
BCGSC_ES_Mapped
RP11-49J3
chr1
5877848
6054509
RP11-49J3
BAC_end_pair UCSC
RP11-426J21
chr1
6062011
6262679
RP11-426J21
BAC_end_pair UCSC
RP11-71M19
chr1
6109639
6295375
RP11-71M19
BAC_end_pair UCSC
4556 282 Kbytes .Supplementary data files not provided
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