GEO help: Mouse over screen elements for information.
Status
Public on Jul 24, 2008
Title
CCDTM Hs_CCDTM36k - version 1
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
NIH Clinical Center, Dept. of Transfusion Medicine, Immunogenetics Section (NIH/CC/DTM)
Manufacture protocol
Microarrays are printed with GeneMachines robotic arrayer from Genomic Solutions (http://www.genomicsolutions.com ) that is fitted with a printhead containing 48 SMP3 printing pins from Telechem International (http://www.arrayit.com ). The human oligo probe set is purchased from Operon Human Genome Array-Ready Oligo Set[tm] (AROS) Version 4.0 which contains 35,035 oligonucleotide probes, representing approximately 25,100 unique genes and 39,600 transcripts excluding control oligos. The human version 4.0 is constructed based on the Ensembl human database build (NCBI-35c), with a full coverage on NCBI human Refseq dataset (04/04/2005). In addition, it integrates a significant portion of unique full-length cDNA clone sequences from H-Invitational Database (release 1.8). The microarray spot densities are 157.5 microns (center-to-center), and one spot is printed per probe per slide. The microarrays are printed on Epoxy coated slide (ThermoFisher) and post processed according to manufacture instruction.
Support
glass
Coating
epoxy
Submission date
Jul 23, 2008
Last update date
Jan 17, 2013
Contact name
Francesco Maria Marincola
E-mail(s)
[email protected] Phone
301-793-8210
Organization name
Sidra Medical and Research Center
Street address
Al Nasr Tower, AL Corniche Street, PO Box 26999
City
Doha
ZIP/Postal code
PO Box 26999
Country
Qatar
Samples (335)
GSM307451 , GSM307452 , GSM307453 , GSM307454 , GSM307455 , GSM307456
GSM307457 ,
GSM307458 ,
GSM307459 ,
GSM307460 ,
GSM307461 ,
GSM307462 ,
GSM307463 ,
GSM307464 ,
GSM307465 ,
GSM307466 ,
GSM307467 ,
GSM449301 ,
GSM449302 ,
GSM449303 ,
GSM449304 ,
GSM449305 ,
GSM449306 ,
GSM449307 ,
GSM449308 ,
GSM449309 ,
GSM449310 ,
GSM449311 ,
GSM449312 ,
GSM449313 ,
GSM449314 ,
GSM449315 ,
GSM449316 ,
GSM449317 ,
GSM449318 ,
GSM449319 ,
GSM449320 ,
GSM449321 ,
GSM449322 ,
GSM449323 ,
GSM449324 ,
GSM449325 ,
GSM449326 ,
GSM449327 ,
GSM449328 ,
GSM449329 ,
GSM449330 ,
GSM449331 ,
GSM449332 ,
GSM449333 ,
GSM449334 ,
GSM449335 ,
GSM449336 ,
GSM449337 ,
GSM449338 ,
GSM449339 ,
GSM449340 ,
GSM449341 ,
GSM449342 ,
GSM449343 ,
GSM449344 ,
GSM449345 ,
GSM449346 ,
GSM449347 ,
GSM449348 ,
GSM449349 ,
GSM449350 ,
GSM449351 ,
GSM449352 ,
GSM449353 ,
GSM449354 ,
GSM449355 ,
GSM449356 ,
GSM449357 ,
GSM449358 ,
GSM449359 ,
GSM449360 ,
GSM449361 ,
GSM449362 ,
GSM449363 ,
GSM449364 ,
GSM449365 ,
GSM449366 ,
GSM449367 ,
GSM449368 ,
GSM449369 ,
GSM449370 ,
GSM449371 ,
GSM449372 ,
GSM449373 ,
GSM449374 ,
GSM449375 ,
GSM449376 ,
GSM449377 ,
GSM449378 ,
GSM449379 ,
GSM449380 ,
GSM449381 ,
GSM449382 ,
GSM449383 ,
GSM449384 ,
GSM449385 ,
GSM449386 ,
GSM449387 ,
GSM449388 ,
GSM449389 ,
GSM449390 ,
GSM449391 ,
GSM449392 ,
GSM449393 ,
GSM449394 ,
GSM449395 ,
GSM449396 ,
GSM449397 ,
GSM449398 ,
GSM449399 ,
GSM449400 ,
GSM449401 ,
GSM449402 ,
GSM449403 ,
GSM449404 ,
GSM449405 ,
GSM449406 ,
GSM449407 ,
GSM449408 ,
GSM449409 ,
GSM449410 ,
GSM449411 ,
GSM449412 ,
GSM449413 ,
GSM449414 ,
GSM449415 ,
GSM449416 ,
GSM449417 ,
GSM449418 ,
GSM449419 ,
GSM449420 ,
GSM449421 ,
GSM449422 ,
GSM449423 ,
GSM449424 ,
GSM449425 ,
GSM449426 ,
GSM449427 ,
GSM449428 ,
GSM449429 ,
GSM449430 ,
GSM449431 ,
GSM449432 ,
GSM449433 ,
GSM449434 ,
GSM449435 ,
GSM449436 ,
GSM449437 ,
GSM449438 ,
GSM449439 ,
GSM449440 ,
GSM449441 ,
GSM449442 ,
GSM449443 ,
GSM449444 ,
GSM449445 ,
GSM449446 ,
GSM449447 ,
GSM449448 ,
GSM449449 ,
GSM449450 ,
GSM449451 ,
GSM449452 ,
GSM449453 ,
GSM449454 ,
GSM449455 ,
GSM449456 ,
GSM449457 ,
GSM449458 ,
GSM449459 ,
GSM449460 ,
GSM449461 ,
GSM449462 ,
GSM449463 ,
GSM449464 ,
GSM449465 ,
GSM449466 ,
GSM449467 ,
GSM449468 ,
GSM449469 ,
GSM449470 ,
GSM449471 ,
GSM449472 ,
GSM449473 ,
GSM449474 ,
GSM449475 ,
GSM449476 ,
GSM449477 ,
GSM449478 ,
GSM449479 ,
GSM449480 ,
GSM449481 ,
GSM449482 ,
GSM449483 ,
GSM449484 ,
GSM449485 ,
GSM449486 ,
GSM449487 ,
GSM449488 ,
GSM449489 ,
GSM449490 ,
GSM449491 ,
GSM449492 ,
GSM592226 ,
GSM592227 ,
GSM592228 ,
GSM592229 ,
GSM592230 ,
GSM611592 ,
GSM611593 ,
GSM611594 ,
GSM611595 ,
GSM611596 ,
GSM611597 ,
GSM611598 ,
GSM611599 ,
GSM611600 ,
GSM611601 ,
GSM611602 ,
GSM611603 ,
GSM611604 ,
GSM611605 ,
GSM611606 ,
GSM611607 ,
GSM647640 ,
GSM647641 ,
GSM647642 ,
GSM647643 ,
GSM647644 ,
GSM647645 ,
GSM647646 ,
GSM647647 ,
GSM647648 ,
GSM647649 ,
GSM1447230 ,
GSM1447231 ,
GSM1447232 ,
GSM1447233 ,
GSM1447234 ,
GSM1447235 ,
GSM1447236 ,
GSM1447237 ,
GSM1447238 ,
GSM1447239 ,
GSM1447240 ,
GSM1447241 ,
GSM1447242 ,
GSM1447243 ,
GSM1447244 ,
GSM1447245 ,
GSM1447246 ,
GSM1447247 ,
GSM1447248 ,
GSM1447249 ,
GSM1447250 ,
GSM1447251 ,
GSM1447252 ,
GSM1447253 ,
GSM1447254 ,
GSM1447255 ,
GSM1447256 ,
GSM1447257 ,
GSM1447258 ,
GSM1447259 ,
GSM1447260 ,
GSM1447261 ,
GSM1447262 ,
GSM1447263 ,
GSM1447264 ,
GSM1447265 ,
GSM1447266 ,
GSM1447267 ,
GSM1447268 ,
GSM1447269 ,
GSM1447270 ,
GSM1447271 ,
GSM1447272 ,
GSM1447273 ,
GSM1447274 ,
GSM1447275 ,
GSM1447276 ,
GSM1447277 ,
GSM1447278 ,
GSM1447279 ,
GSM1447280 ,
GSM1447281 ,
GSM1447282 ,
GSM1447283 ,
GSM1447284 ,
GSM1447285 ,
GSM1447286 ,
GSM1447287 ,
GSM1447288 ,
GSM1447289 ,
GSM1447290 ,
GSM1447291 ,
GSM1447292 ,
GSM1447293 ,
GSM1447294 ,
GSM1447295 ,
GSM1447296 ,
GSM1447297 ,
GSM1447298 ,
GSM1447299 ,
GSM1447300 ,
GSM1447301 ,
GSM1447302 ,
GSM1447303 ,
GSM1447304 ,
GSM1447305 ,
GSM1447306 ,
GSM1447307 ,
GSM1447308 ,
GSM1447309 ,
GSM1447310 ,
GSM1447311 ,
GSM1447312 ,
GSM1447313 ,
GSM1447314 ,
GSM1447315 ,
GSM1447316 ,
GSM1447317 ,
GSM1447318 ,
GSM1447319 ,
GSM1447320 ,
GSM1447321 ,
GSM1447322 ,
GSM1447323 ,
GSM1447324 Series (8)
GSE12228 Gene expression profiling among human embryonic stem cells, differerentiated EBs and adult cells
GSE12250 Human embryonic stem cells, differerentiated EBs and adult cells
GSE17952 Human T cells isolated from healthy European and African American blood donors: Control vs. Interferon alpha 2b-treated
GSE20431 Gene expression profiling on FePro labeled bone marrow stromal cells
GSE24067 Progressing vs regressing melanoma metastases
GSE24871 Global transcriptome analysis of Human Bone Marrow Stromal Cells (BMSCs)
GSE26383 Response to immunotherapy in melanoma metastasis
GSE59837 Differential Responses of Plasmacytoid Dendritic Cells to Influenza and Distinct Viral Pathogens
Relations Affiliated with
GPL10077
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
OLIGO_ID Oligo identifier
ORF Gene Name
UNIGENE UniGene Identifier Build #Hs.214
DESCRIPTION Gene Description
GB_ACC GENBANK ID assigned by vendor
GB_ACC RefSeq ID assigned by mAdb
SPOT_ID
Data table ID MADB_WELL_ID OLIGO_ID ORF UNIGENE DESCRIPTION GB_ACC GB_ACC SPOT_ID 6590735_1
6590735
H200000163
NDUFB7 532853
NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa (NDUFB7), nuclear gene encoding mitochondrial protein, mRNA.
NM_004146 NM_004146 6590747_1
6590747
H200000170
CSTF2 132370
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa (CSTF2), mRNA.
NM_001325 NM_001325 6590831_1
6590831
H200000203
CXCL1 789
chemokine (C-X-C motif) ligand 1 (melanoma growth stimulating activity, alpha) (CXCL1), mRNA.
NM_001511 NM_001511 6590843_1
6590843
H200000214
HOXB7 436181
homeobox B7 (HOXB7), mRNA.
NM_004502 NM_004502 6590927_1
6590927
H200000250
GCNT2 519884
glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group) (GCNT2), transcript variant 2, mRNA.
NM_001491 NM_001491 6590939_1
6590939
H200000259
PDHB 161357
pyruvate dehydrogenase (lipoamide) beta (PDHB), mRNA.
NM_000925 NM_000925 6591023_1
6591023
H200000289
LTBR 1116
lymphotoxin beta receptor (TNFR superfamily, member 3) (LTBR), mRNA.
NM_002342 NM_002342 6591035_1
6591035
H200000300
THPO 1166
thrombopoietin (myeloproliferative leukemia virus oncogene ligand, megakaryocyte growth and development factor) (THPO), mRNA.
NM_000460 NM_000460 6591119_1
6591119
H200000788
MAP2K1 145442
mitogen-activated protein kinase kinase 1 (MAP2K1), mRNA.
NM_002755 NM_002755 6591131_1
6591131
H200000796
FUSIP1 3530
FUS interacting protein (serine/arginine-rich) 1 (FUSIP1), transcript variant 2, mRNA.
NM_054016 NM_054016 6591215_1
6591215
H200000825
COPS7A 530823
COP9 constitutive photomorphogenic homolog subunit 7A (Arabidopsis) (COPS7A), mRNA.
NM_016319 NM_016319 6591227_1
6591227
H200000838
STMN4 201058
stathmin-like 4 (STMN4), mRNA.
NM_030795 NM_030795 6591311_1
6591311
H200000870
MED13L 654691
mediator complex subunit 13-like (MED13L), mRNA.
AL133033 NM_015335 6591323_1
6591323
H200000879
REG1B 4158
regenerating islet-derived 1 beta (pancreatic stone protein, pancreatic thread protein) (REG1B), mRNA.
NM_006507 NM_006507 6591407_1
6591407
H200000913
PSMC1 356654
proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1), mRNA.
BC013908 NM_002802 6591419_1
6591419
H200000919
FEN1 409065
flap structure-specific endonuclease 1 (FEN1), mRNA.
NM_004111 NM_004111 6591503_1
6591503
H200001462
C12orf29 591009
chromosome 12 open reading frame 29 (C12orf29), mRNA.
AL137488 NM_001009894 6591515_1
6591515
H200001474
GABARAP 647421
GABA(A) receptor-associated protein (GABARAP), mRNA.
NM_007278 NM_007278 6591599_1
6591599
H200001516
PELI1 7886
pellino homolog 1 (Drosophila) (PELI1), mRNA.
NM_020651 NM_020651 6591611_1
6591611
H200001529
SCAMP5 374180
secretory carrier membrane protein 5 (SCAMP5), mRNA.
AK056438 NM_138967
35788 4035 Kbytes .Supplementary data files not provided
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